Sequence Similarity Clusters for the Entities in PDB 4DNR

Entity #1 | Chains: B,C
Cation efflux system protein CusB protein, length: 413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 4125
95 % 4 8 4480 Flexibility: Medium
Max RMSD: 9.6, Avg RMSD: 5.0
PDBFlex
90 % 4 8 4519
70 % 4 8 4420
50 % 4 8 4244
40 % 4 8 4018
30 % 4 8 3650
Entity #2 | Chains: A
Cation efflux system protein CusA protein, length: 1054 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65202
95 % 6 11 6929 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.6
PDBFlex
90 % 6 11 6900
70 % 6 11 6689
50 % 6 11 6213
40 % 6 11 5773
30 % 8 13 2893

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NE5 1 B, C Cation efflux system protein cusB 562
2 4DNT 1 B, C Cation efflux system protein CusB 562
3 3OOC 1 A, B Cation efflux system protein cusB 562
4 4DNR 1 B, C Cation efflux system protein CusB 562
5 4DOP 1 B, C Cation efflux system protein CusB 562
6 3OW7 1 A, B Cation efflux system protein cusB 562
7 3H94 1 A, B Cation efflux system protein cusB 562
8 3OPO 1 A, B Cation efflux system protein cusB 562