Sequence Similarity Clusters for the Entities in PDB 4DNR

Entity #1 | Chains: B,C
Cation efflux system protein CusB protein, length: 413 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 4045
95 % 4 8 4401 Flexibility: Medium
Max RMSD: 9.6, Avg RMSD: 5.0
PDBFlex
90 % 4 8 4446
70 % 4 8 4353
50 % 4 8 4188
40 % 4 8 3971
30 % 4 8 3615
Entity #2 | Chains: A
Cation efflux system protein CusA protein, length: 1054 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 64336
95 % 6 11 6808 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.6
PDBFlex
90 % 6 11 6789
70 % 6 11 6782
50 % 6 11 6309
40 % 6 11 5711
30 % 8 13 2864

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3NE5 1 B, C Cation efflux system protein cusB 562
2 4DNT 1 B, C Cation efflux system protein CusB 562
3 3OOC 1 A, B Cation efflux system protein cusB 562
4 4DNR 1 B, C Cation efflux system protein CusB 562
5 4DOP 1 B, C Cation efflux system protein CusB 562
6 3OW7 1 A, B Cation efflux system protein cusB 562
7 3H94 1 A, B Cation efflux system protein cusB 562
8 3OPO 1 A, B Cation efflux system protein cusB 562