Sequence Similarity Clusters for the Entities in PDB 4DN4

Entity #1 | Chains: L
CNTO888 LIGHT CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43567
95 % 58 92 235 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.8
PDBFlex
90 % 492 780 2
70 % 1602 2553 1
50 % 3259 5180 1
40 % 3698 5834 1
30 % 4570 7269 1
Entity #2 | Chains: H
CNTO888 HEAVY CHAIN protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 11641
95 % 8 10 5397 Flexibility: Medium
Max RMSD: 5.7, Avg RMSD: 3.1
PDBFlex
90 % 24 37 813
70 % 1574 2511 2
50 % 3260 5180 1
40 % 3699 5834 1
30 % 4571 7269 1
Entity #3 | Chains: M
C-C motif chemokine 2 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 6395
95 % 7 11 4061 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 7 11 4114
70 % 7 14 3311
50 % 9 19 2415
40 % 28 59 362
30 % 34 71 291

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures