Sequence Similarity Clusters for the Entities in PDB 4DN4

Entity #1 | Chains: L
CNTO888 LIGHT CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39497
95 % 50 77 270 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 2.0
PDBFlex
90 % 428 683 3
70 % 1173 1841 2
50 % 2870 4537 1
40 % 2870 4537 1
30 % 3324 5342 1
Entity #2 | Chains: H
CNTO888 HEAVY CHAIN protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38553
95 % 8 10 4925 Flexibility: Low
Max RMSD: 4.9, Avg RMSD: 2.9
PDBFlex
90 % 18 28 1198
70 % 1388 2197 1
50 % 2871 4537 1
40 % 2871 4537 1
30 % 3325 5342 1
Entity #3 | Chains: M
C-C motif chemokine 2 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69680
95 % 7 11 4133 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.1
PDBFlex
90 % 7 11 4162
70 % 7 14 3136
50 % 9 19 2248
40 % 26 57 323
30 % 29 62 296

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.