Sequence Similarity Clusters for the Entities in PDB 4DN4

Entity #1 | Chains: L
CNTO888 LIGHT CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39825
95 % 51 78 270 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 2.0
PDBFlex
90 % 435 693 3
70 % 1423 2264 1
50 % 2892 4587 1
40 % 2892 4587 1
30 % 3346 5394 1
Entity #2 | Chains: H
CNTO888 HEAVY CHAIN protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38878
95 % 8 10 4997 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 3.1
PDBFlex
90 % 18 28 1207
70 % 1399 2222 2
50 % 2893 4587 1
40 % 2893 4587 1
30 % 3347 5394 1
Entity #3 | Chains: M
C-C motif chemokine 2 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70174
95 % 7 11 4187 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.2
PDBFlex
90 % 7 11 4218
70 % 7 14 3163
50 % 9 19 2287
40 % 27 58 305
30 % 30 63 283

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.