Sequence Similarity Clusters for the Entities in PDB 4DN4

Entity #1 | Chains: L
CNTO888 LIGHT CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42151
95 % 57 90 246 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 506 791 2
70 % 1567 2479 1
50 % 3180 5021 1
40 % 3180 5021 1
30 % 3726 5951 1
Entity #2 | Chains: H
CNTO888 HEAVY CHAIN protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41150
95 % 8 10 5336 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 3.1
PDBFlex
90 % 20 31 1150
70 % 1535 2429 2
50 % 3181 5021 1
40 % 3181 5021 1
30 % 3727 5951 1
Entity #3 | Chains: M
C-C motif chemokine 2 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74033
95 % 7 11 4434 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 7 11 4474
70 % 7 14 3360
50 % 9 19 2446
40 % 27 59 350
30 % 31 65 294

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures