Sequence Similarity Clusters for the Entities in PDB 4DN4

Entity #1 | Chains: L
CNTO888 LIGHT CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40851
95 % 54 85 243 Flexibility: Low
Max RMSD: 6.2, Avg RMSD: 1.9
PDBFlex
90 % 456 724 3
70 % 1477 2346 1
50 % 2999 4752 1
40 % 2999 4752 1
30 % 3481 5606 1
Entity #2 | Chains: H
CNTO888 HEAVY CHAIN protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39878
95 % 8 10 5148 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 3.1
PDBFlex
90 % 18 28 1237
70 % 1448 2299 2
50 % 3000 4752 1
40 % 3000 4752 1
30 % 3482 5606 1
Entity #3 | Chains: M
C-C motif chemokine 2 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71992
95 % 7 11 4285 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 7 11 4319
70 % 7 14 3246
50 % 9 19 2342
40 % 27 58 318
30 % 30 63 290

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.