Sequence Similarity Clusters for the Entities in PDB 4DN4

Entity #1 | Chains: L
CNTO888 LIGHT CHAIN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40407
95 % 51 79 268 Flexibility: Low
Max RMSD: 6.0, Avg RMSD: 1.9
PDBFlex
90 % 439 701 3
70 % 1435 2287 1
50 % 2915 4633 1
40 % 2915 4633 1
30 % 3382 5461 1
Entity #2 | Chains: H
CNTO888 HEAVY CHAIN protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39444
95 % 8 10 5074 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 3.0
PDBFlex
90 % 18 28 1219
70 % 1410 2244 2
50 % 2916 4633 1
40 % 2916 4633 1
30 % 3383 5461 1
Entity #3 | Chains: M
C-C motif chemokine 2 protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71204
95 % 7 11 4225 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 7 11 4255
70 % 7 14 3206
50 % 9 19 2309
40 % 27 58 309
30 % 30 63 287

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.