Sequence Similarity Clusters for the Entities in PDB 4DMI

Entity #1 | Chains: A,B,C,D,E
Capsid Protein protein, length: 176 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 7645
95 % 1 2 7727 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 2.2
PDBFlex
90 % 1 2 7661
70 % 1 2 7432
50 % 1 2 6848
40 % 1 2 6338
30 % 1 2 5531

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures