Sequence Similarity Clusters for the Entities in PDB 4DLD

Entity #1 | Chains: A,B
Glutamate receptor, ionotropic kainate 1 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1137
95 % 28 43 507 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.8
PDBFlex
90 % 28 43 540
70 % 57 86 237
50 % 178 276 31
40 % 178 277 44
30 % 192 293 55

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures