Sequence Similarity Clusters for the Entities in PDB 4DLD

Entity #1 | Chains: A,B
Glutamate receptor, ionotropic kainate 1 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 32 587
95 % 28 43 524 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.7
PDBFlex
90 % 28 43 554
70 % 57 88 239
50 % 178 278 37
40 % 178 279 51
30 % 218 360 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures