Sequence Similarity Clusters for the Entities in PDB 4DLD

Entity #1 | Chains: A,B
Glutamate receptor, ionotropic kainate 1 protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 17 1117
95 % 28 43 474 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.8
PDBFlex
90 % 28 43 515
70 % 57 86 222
50 % 174 272 35
40 % 174 273 47
30 % 188 289 55

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.