Sequence Similarity Clusters for the Entities in PDB 4DL0

Entity #1 | Chains: C,I
V-type proton ATPase subunit C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29695
95 % 1 2 24605 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 23781
70 % 1 2 21636
50 % 1 2 18712
40 % 1 2 16667
30 % 1 2 14251
Entity #2 | Chains: G,K
V-type proton ATPase subunit G protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 1282
95 % 1 10 1718 Flexibility: Medium
Max RMSD: 8.8, Avg RMSD: 3.2
PDBFlex
90 % 1 10 1759
70 % 1 10 1775
50 % 1 10 1821
40 % 1 10 1831
30 % 1 10 1772
Entity #3 | Chains: E,J
V-type proton ATPase subunit E protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 1270
95 % 1 10 1707 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 2.9
PDBFlex
90 % 1 10 1749
70 % 1 10 1765
50 % 1 10 1810
40 % 1 10 1819
30 % 1 10 1764

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures