Sequence Similarity Clusters for the Entities in PDB 4DL0

Entity #1 | Chains: C,I
V-type proton ATPase subunit C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25667
95 % 1 2 22643 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 21925
70 % 1 2 20020
50 % 1 2 17895
40 % 1 2 15830
30 % 1 2 13272
Entity #2 | Chains: G,K
V-type proton ATPase subunit G protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 1492
95 % 1 10 1772 Flexibility: Medium
Max RMSD: 8.8, Avg RMSD: 3.2
PDBFlex
90 % 1 10 1815
70 % 1 10 1823
50 % 1 10 1860
40 % 1 10 1844
30 % 1 10 1784
Entity #3 | Chains: E,J
V-type proton ATPase subunit E protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 1465
95 % 1 10 1770 Flexibility: Low
Max RMSD: 8.5, Avg RMSD: 2.9
PDBFlex
90 % 1 10 1813
70 % 1 10 1788
50 % 1 10 1822
40 % 1 10 1808
30 % 1 10 1760

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures