Sequence Similarity Clusters for the Entities in PDB 4DL0

Entity #1 | Chains: C,I
V-type proton ATPase subunit C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27923
95 % 1 2 23165 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 2 22428
70 % 1 2 20529
50 % 1 2 17811
40 % 1 2 15883
30 % 1 2 13578
Entity #2 | Chains: G,K
V-type proton ATPase subunit G protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 1359
95 % 1 9 1834 Flexibility: Medium
Max RMSD: 8.8, Avg RMSD: 3.2
PDBFlex
90 % 1 9 1880
70 % 1 9 1907
50 % 1 9 1915
40 % 1 9 1917
30 % 1 9 1845
Entity #3 | Chains: E,J
V-type proton ATPase subunit E protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 1334
95 % 1 9 1810 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.8
PDBFlex
90 % 1 9 1853
70 % 1 9 1872
50 % 1 9 1889
40 % 1 9 1894
30 % 1 9 1827

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.