Sequence Similarity Clusters for the Entities in PDB 4DII

Entity #1 | Chains: L
Prothrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 205 338 45
95 % 205 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 205 339 67
70 % 205 341 78
50 % 205 341 109
40 % 205 341 132
30 % 205 341 140
Entity #2 | Chains: H
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 181 290 75
95 % 225 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 227 384 48
70 % 227 408 46
50 % 227 408 84
40 % 1230 1863 4
30 % 1238 1885 6
Entity #3 | Chains: D
Thrombin binding aptamer dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures