Sequence Similarity Clusters for the Entities in PDB 4DII

Entity #1 | Chains: L
Prothrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 203 333 50
95 % 205 341 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 205 341 64
70 % 205 341 78
50 % 205 341 109
40 % 205 341 132
30 % 205 341 142
Entity #2 | Chains: H
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 202 331 51
95 % 225 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 227 384 39
70 % 227 408 47
50 % 227 408 86
40 % 1224 1855 4
30 % 1231 1869 7
Entity #3 | Chains: D
Thrombin binding aptamer dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures