Sequence Similarity Clusters for the Entities in PDB 4DII

Entity #1 | Chains: L
Prothrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 197 329 44
95 % 197 330 60
90 % 197 330 65
70 % 197 332 76
50 % 197 332 101
40 % 197 332 125
30 % 197 332 136
Entity #2 | Chains: H
Prothrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 284 55
95 % 217 368 37
90 % 219 375 38
70 % 219 399 44
50 % 219 399 78
40 % 1069 1621 4
30 % 1155 1763 6
Entity #3 | Chains: D
Thrombin binding aptamer dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.