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An Information Portal to 109274 Biological Macromolecular Structures

X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of potassium ions
Sequence Clustering and Redundancy Reduction Results
4DII
Sequence Clusters for the Sequence Entities in PDB 4DII
Entity #1: Chains: L - Prothrombin protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 306 14
95% 178 307 21
90% 178 307 27
70% 178 309 38
50% 178 309 62
40% 178 309 80
30% 178 309 99
Entity #2: Chains: H - Prothrombin protein, length: 259 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 262 32
95% 198 345 18
90% 200 352 19
70% 200 376 23
50% 200 376 31
40% 983 1510 3
30% 1060 1639 6
Entity #3: Chains: D - Thrombin binding aptamer dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.