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An Information Portal to 110071 Biological Macromolecular Structures

X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of potassium ions
Sequence Clustering and Redundancy Reduction Results
4DII
Sequence Clusters for the Sequence Entities in PDB 4DII
Entity #1: Chains: L - Prothrombin protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 307 14
95% 179 308 22
90% 179 308 27
70% 179 310 38
50% 179 310 75
40% 179 310 96
30% 179 310 113
Entity #2: Chains: H - Prothrombin protein, length: 259 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 263 44
95% 199 346 18
90% 201 353 19
70% 201 377 24
50% 201 377 40
40% 988 1515 3
30% 1065 1644 6
Entity #3: Chains: D - Thrombin binding aptamer dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.