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An Information Portal to 106858 Biological Macromolecular Structures

X-ray structure of the complex between human alpha thrombin and thrombin binding aptamer in the presence of sodium ions
Sequence Clustering and Redundancy Reduction Results
4DIH
Sequence Clusters for the Sequence Entities in PDB 4DIH
Entity #1: Chains: L - Prothrombin protein, length: 36 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 305 13
95% 89 306 21
90% 89 306 26
70% 89 308 36
50% 89 308 50
40% 89 308 66
30% 89 308 89
Entity #2: Chains: H - Prothrombin protein, length: 259 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 262 21
95% 92 343 18
90% 92 350 19
70% 92 374 23
50% 92 374 29
40% 624 1490 3
30% 661 1616 6
Entity #3: Chains: D - Thrombin binding aptamer dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.