Sequence Similarity Clusters for the Entities in PDB 4DCP

Entity #1 | Chains: A,D
Caspase-3 subunit p17 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43901
95 % 15 40 908 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 15 40 942
70 % 15 40 972
50 % 15 41 986
40 % 16 48 757
30 % 16 48 748
Entity #2 | Chains: B,E
Caspase-3 subunit p12 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 36 706
95 % 15 39 910 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 15 42 833
70 % 15 42 867
50 % 16 66 444
40 % 16 67 468
30 % 18 83 324
Entity #3 | Chains: C,F
Caspase Inhibitor AC-DEVD-CHO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.