Sequence Similarity Clusters for the Entities in PDB 4DCO

Entity #1 | Chains: A,D
Caspase-3 subunit p17 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 39 820
95 % 14 40 971 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 40 996
70 % 14 40 1031
50 % 14 41 1046
40 % 15 48 810
30 % 15 48 813
Entity #2 | Chains: B,E
Caspase-3 subunit p12 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 38 780
95 % 19 53 640 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 19 56 611
70 % 19 56 655
50 % 20 80 421
40 % 20 81 442
30 % 22 97 328
Entity #3 | Chains: C,F
Caspase Inhibitor AC-DEVD-CHO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2DKO 1 A Caspase-3 Caspase-3 p17 subunit, residues 29-174 9606 3.4.22.56 | Details
2 1QTN 1 A CASPASE-8 P18 FRAGMENT 9606 3.4.22.61 | Details
3 2XYG 1 A CASPASE-3 SUBUNIT P17 RESIDUES 29-174 9606 3.4.22.56 | Details
4 1NME 1 A Caspase-3 large subunit 9606 3.4.22.56 | Details
5 2CJY 1 A CASPASE-3 ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
6 2H5I 1 A caspase-3, p17 subunit residues 29-174 9606 3.4.22.56 | Details
7 2CDR 1 A CASPASE-3 SUBUNIT P17 ALPHA SUBUNIT RESIDUES 29-175 9606 3.4.22.56 | Details
8 2CNL 1 A CASPASE-3 SUBUNIT P17 ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
9 3EDQ 1 A, C Caspase-3 UNP RESIDUES 29-175 9606 3.4.22.56 | Details
10 2CJX 1 A CASPASE-3 ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
11 2CNK 1 A CASPASE-3 P17 SUBUNIT ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
12 2CNN 1 A CASPASE-3 SUBUNIT P17 ALPHA SUBUNIT 9606 3.4.22.56 | Details
13 2C1E 1 A CASPASE-3 SUBUNIT P17 ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
14 4DCJ 1 A, D Caspase-3 subunit p17 9606 3.4.22.56 | Details
15 4DCO 1 A, D Caspase-3 subunit p17 9606 3.4.22.56 | Details
16 4DCP 1 A, D Caspase-3 subunit p17 9606 3.4.22.56 | Details
17 3KJN 1 A Caspase-8 residues 211-374 9606 3.4.22.61 | Details
18 2Y1L 1 A, C CASPASE-8 P18 SUBUNIT, RESIDUES 218-374 9606 3.4.22.61 | Details
19 3KJQ 1 A Caspase-8 9606 3.4.22.61 | Details
20 2XYP 1 A CASPASE-3 SUBUNIT P17 RESIDUES 29-174 9606 3.4.22.56 | Details
21 2XYH 1 A CASPASE-3 SUBUNIT P17 RESIDUES 29-174 9606 3.4.22.56 | Details
22 2C2K 1 A CASPASE-3 SUBUNIT P17 ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
23 2C2M 1 A CASPASE-3 SUBUNIT P17 ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
24 2CNO 1 A CASPASE-3 P17 SUBUNIT ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
25 2C2Z 1 A CASPASE-8 P18 SUBUNIT ALPHA SUB-UNIT, RESIDUES 218-374 9606 3.4.22.61 | Details
26 3KJF 1 A Caspase-3 9606 3.4.22.56 | Details
27 3GJS 1 A, C Caspase-3 subunit p17 9606 3.4.22.56 | Details
28 2H5J 1 A, C caspase-3, p17 subunit residues 29-174 9606 3.4.22.56 | Details
29 2XZD 1 A, C CASPASE-3 P17 SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
30 2Y0B 1 A, C CASPASE-3 SUBUNIT P17 9606 3.4.22.56 | Details
31 1RHJ 1 A, C Caspase-3 P17 subunit 9606 3.4.22.56 | Details
32 3GJR 1 A, C Caspase-3 subunit p17 9606 3.4.22.56 | Details
33 2C2O 1 A CASPASE-3 SUBUNIT P17 ALPHA SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
34 2H65 1 A, C caspase-3, p17 subunit residues 29-174 9606 3.4.22.56 | Details
35 1RHU 1 A Caspase-3 P17 SUBUNIT 9606 3.4.22.56 | Details
36 3GJT 1 A, C Caspase-3 subunit p17 9606 3.4.22.56 | Details
37 1RHK 1 A Caspase-3 P17 SUBUNIT 9606 3.4.22.56 | Details
38 1RHM 1 A, C CASP-3 P17 SUBUNIT 9606 3.4.22.56 | Details
39 1RE1 1 A Caspase-3 P17 subunit 9606 3.4.22.56 | Details
40 1PAU 1 A APOPAIN 9606 3.4.22.56 | Details
41 1I51 1 A, C CASPASE-7 SUBUNIT P20 9606 3.4.22.60 | Details
42 2XZT 1 A, C CASPASE-3 P17 SUBUNIT, RESIDUES 29-175 9606 3.4.22.56 | Details
43 1GFW 1 A CASPASE-3 (APOPAIN, P20) ACTIVATED MATURE CASPASE-3 (P20) WITHOUT PRO-DOMAIN OR LINKER (RESIDUES 29-175) 9606 3.4.22.56 | Details
44 3GJQ 1 A, C Caspase-3 subunit p17 9606 3.4.22.56 | Details
45 1QDU 1 A, C, E, G, I, K CASPASE-8 ALPHA-CHAIN 9606 3.4.22.61 | Details
46 1RHR 1 A Caspase-3 P17 subunit 9606 3.4.22.56 | Details
47 1F9E 1 A, C, E, G, I, K CASPASE-8 ALPHA CHAIN 9606 3.4.22.61 | Details
48 1RHQ 1 A, D Caspase-3 P17 SUBUNIT 9606 3.4.22.56 | Details