Sequence Similarity Clusters for the Entities in PDB 4DCO

Entity #1 | Chains: A,D
Caspase-3 subunit p17 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44863
95 % 14 40 937 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 40 969
70 % 14 40 998
50 % 14 41 1008
40 % 15 48 779
30 % 15 48 767
Entity #2 | Chains: B,E
Caspase-3 subunit p12 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 36 721
95 % 14 39 939 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 14 42 854
70 % 14 42 883
50 % 15 66 451
40 % 15 67 483
30 % 17 83 341
Entity #3 | Chains: C,F
Caspase Inhibitor AC-DEVD-CHO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures