Sequence Similarity Clusters for the Entities in PDB 4DCO

Entity #1 | Chains: A,D
Caspase-3 subunit p17 protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 39 803
95 % 14 40 947 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 14 40 974
70 % 14 40 1009
50 % 14 41 1023
40 % 15 48 795
30 % 15 48 794
Entity #2 | Chains: B,E
Caspase-3 subunit p12 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 38 761
95 % 19 53 625 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 19 56 600
70 % 19 56 643
50 % 20 80 405
40 % 20 81 428
30 % 22 97 317
Entity #3 | Chains: C,F
Caspase Inhibitor AC-DEVD-CHO protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures