Sequence Similarity Clusters for the Entities in PDB 4DA4

Entity #1 | Chains: A,B
DNA (cytosine-5)-methyltransferase 1 protein, length: 873 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 25907
95 % 3 5 10429 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.6
PDBFlex
90 % 3 5 10302
70 % 3 8 6598
50 % 3 8 6152
40 % 3 8 5756
30 % 3 8 5181
Entity #2 | Chains: C,E
DNA_UPPER_STRAND dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
DNA_LOWER_STRAND dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures