Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44073
95 % 9 15 2056
90 % 9 15 2109
70 % 27 43 770
50 % 31 59 541
40 % 119 270 114
30 % 392 868 9
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 14011
95 % 2 5 5734
90 % 2 5 5729
70 % 6 11 2640
50 % 7 13 2275
40 % 7 13 2263
30 % 7 13 2147

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.