Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48137
95 % 9 15 2333
90 % 9 15 2395
70 % 33 49 731
50 % 37 66 537
40 % 133 285 120
30 % 502 1019 9
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 15433
95 % 2 5 6353
90 % 2 5 6334
70 % 6 11 2931
50 % 8 14 2282
40 % 8 14 2265
30 % 8 14 2164

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.