Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48785
95 % 9 15 2366 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 9 15 2427
70 % 33 49 746
50 % 37 66 547
40 % 133 285 122
30 % 512 1040 9
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 15682
95 % 2 5 6453 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 5 6436
70 % 6 11 2975
50 % 8 14 2306
40 % 8 14 2293
30 % 8 14 2191

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.