Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50414
95 % 9 15 2478 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 9 15 2540
70 % 33 49 764
50 % 37 66 564
40 % 135 287 126
30 % 527 1062 9
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16334
95 % 2 5 6681 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 5 6676
70 % 6 12 2344
50 % 8 15 1924
40 % 8 15 1923
30 % 8 15 1852

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures