Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45269
95 % 9 15 2177
90 % 9 15 2237
70 % 29 45 746
50 % 33 61 545
40 % 124 275 117
30 % 424 908 9
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 14459
95 % 2 5 5906
90 % 2 5 5900
70 % 6 11 2762
50 % 7 13 2355
40 % 7 13 2336
30 % 7 13 2214

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.