Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 42747
95 % 8 14 2532
90 % 8 14 2573
70 % 26 42 786
50 % 30 58 554
40 % 118 269 111
30 % 377 840 10
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 13524
95 % 2 5 5548
90 % 2 5 5541
70 % 6 11 2552
50 % 7 13 2199
40 % 7 13 2195
30 % 7 13 2080

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.