Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43062
95 % 9 15 2010
90 % 9 15 2055
70 % 27 43 729
50 % 31 59 528
40 % 119 270 110
30 % 381 847 9
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 13649
95 % 2 5 5595
90 % 2 5 5591
70 % 6 11 2577
50 % 7 13 2219
40 % 7 13 2212
30 % 7 13 2092

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.