Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 31588
95 % 9 15 2503 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.7
PDBFlex
90 % 9 15 2578
70 % 33 49 762
50 % 62 95 370
40 % 152 318 110
30 % 190 401 70
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 16370
95 % 2 5 6731 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 2 5 6719
70 % 6 12 2380
50 % 8 15 1922
40 % 8 15 1926
30 % 8 15 1844

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures