Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 45719
95 % 9 15 2195
90 % 9 15 2257
70 % 29 45 752
50 % 33 61 548
40 % 124 275 117
30 % 427 914 9
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 14580
95 % 2 5 5947
90 % 2 5 5939
70 % 6 11 2781
50 % 7 13 2376
40 % 7 13 2350
30 % 7 13 2226

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.