Sequence Similarity Clusters for the Entities in PDB 4D8D

Entity #1 | Chains: A,C
Tyrosine-protein kinase Fyn protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44799
95 % 9 15 2152
90 % 9 15 2208
70 % 29 45 724
50 % 33 61 532
40 % 121 272 117
30 % 420 902 9
Entity #2 | Chains: B,D
Protein Nef protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 14300
95 % 2 5 5846
90 % 2 5 5842
70 % 6 11 2723
50 % 7 13 2321
40 % 7 13 2308
30 % 7 13 2185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.