Sequence Similarity Clusters for the Entities in PDB 4C7O

Entity #1 | Chains: A,C
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36879
95 % 1 1 28902 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 27891
70 % 1 1 25169
50 % 2 2 13824
40 % 18 21 1771
30 % 42 51 664
Entity #2 | Chains: B,D
SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8574
95 % 3 6 8909 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.4
PDBFlex
90 % 3 6 8833
70 % 3 6 8497
50 % 12 16 2376
40 % 21 26 1333
30 % 43 51 664
Entity #3 | Chains: E
SRP RNA rna, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1VMA 1 A, B cell division protein FtsY 2336
2 2QY9 1 A Cell division protein ftsY NG domain residues 196-497 562
3 1OKK 2 D CELL DIVISION PROTEIN FTSY NG DOMAIN, RESIDUES 2-304 271
4 2J7P 2 D, E CELL DIVISION PROTEIN FTSY NG, RESIDUES 21-303 271
5 1RJ9 1 A Signal Recognition Protein 271
6 2IYL 1 D CELL DIVISION PROTEIN FTSY NGD20, RESIDUES 20-303 271
7 2Q9C 1 A, B Cell division protein ftsY 271
8 1FTS 1 A FTSY NG-DOMAIN RESIDUES 197 - 497 562
9 2CNW 2 D, E, F CELL DIVISION PROTEIN FTSY GDP, ALF4, GMP RESIDUES 20-303 271
10 2Q9B 1 A, B Cell division protein ftsY 271
11 2Q9A 1 A, B Cell division protein ftsY 271
12 4C7O 2 B, D SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NG DOMAIN, RESIDUES 224-497 562
13 2XXA 2 B, D SRP RECEPTOR FTSY RESIDUES 196-497 562
14 5NCO 40 l Signal recognition particle receptor FtsY 562
15 3ZN8 2 D SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY NG, RESIDUES 201-495 562 3.6.5.4 | Details
16 2XKV 4 D CELL DIVISION PROTEIN FTSY 562