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The structural basis of FtsY recruitment and GTPase activation by SRP RNA
Sequence Clustering and Redundancy Reduction Results
4C7O
Cluster # 1441 Members. Sequence cutoff: 40% Cluster size: 20 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1LS1 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271  
2 2J45 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271  
3 2J46 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271  
4 2C04 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271  
5 2C03 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271  
6 1JPN 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271  
7 1OKK 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 0-293 271  
8 2J7P 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-293 271  
9 1NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271  
10 1FFH 1 A FFH THE NG FRAGMENT WAS GENERATED BY PROTEOLYSIS 'NG' GTPASE FRAGMENT OF FFH 271  
11 2NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271  
12 1RJ9 2 B Signal recognition particle protein NG domain (Residues 1-300) 271  
13 1O87 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG GTPASE DOMAIN, RESIDUES 1-296 271  
14 3NG1 1 A, B SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271  
15 1JPJ 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271  
16 2CNW 1 A, B, C SIGNAL RECOGNITION PARTICLE PROTEIN GDP, ALF4, GMP NG DOMAIN RESIDUES 1-293 271  
17 4C7O 1 A, C SIGNAL RECOGNITION PARTICLE PROTEIN RESIDUES 1-296 83333  
18 3ZN8 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 2-295 562   3.6.5.4   
19 2XKV 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 1-294 562   3.6.5.4   
20 1RY1 12 U Signal recognition particle protein 271  
 
Sequence Clusters for the Sequence Entities in PDB 4C7O
Entity #1: Chains: A,C - SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 298 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 27377
95% 1 1 21660
90% 1 1 21005
70% 1 1 19188
50% 1 1 16680
40% 17 20 1441
30% 33 41 640
Entity #2: Chains: B,D - SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY protein, length: 278 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 5 7484
95% 3 5 7726
90% 3 5 7650
70% 3 5 7339
50% 12 15 1870
40% 15 19 1483
30% 34 41 640
Entity #3: Chains: E - SRP RNA rna, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.