Sequence Similarity Clusters for the Entities in PDB 4C7O

Entity #1 | Chains: A,C
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37502
95 % 1 1 29334 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 28302
70 % 1 1 25530
50 % 2 2 14038
40 % 18 21 1814
30 % 42 51 672
Entity #2 | Chains: B,D
SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8743
95 % 3 6 9046 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.4
PDBFlex
90 % 3 6 8970
70 % 3 6 8625
50 % 12 16 2438
40 % 21 26 1357
30 % 43 51 672
Entity #3 | Chains: E
SRP RNA rna, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LS1 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
2 2J45 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
3 2J46 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN G DOMAIN, RESIDUES 1-296 271
4 2C04 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
5 2C03 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-296 271
6 1JPN 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
7 1OKK 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 0-293 271
8 2J7P 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 1-293 271
9 1NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
10 1FFH 1 A FFH THE NG FRAGMENT WAS GENERATED BY PROTEOLYSIS 'NG' GTPASE FRAGMENT OF FFH 271
11 2NG1 1 A SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
12 1RJ9 2 B Signal recognition particle protein NG domain (Residues 1-300) 271
13 1O87 1 A, B SIGNAL RECOGNITION PARTICLE PROTEIN NG GTPASE DOMAIN, RESIDUES 1-296 271
14 3NG1 1 A, B SIGNAL SEQUENCE RECOGNITION PROTEIN FFH NG GTPASE FRAGMENT 271
15 1JPJ 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG domain 271
16 2CNW 1 A, B, C SIGNAL RECOGNITION PARTICLE PROTEIN GDP, ALF4, GMP NG DOMAIN RESIDUES 1-293 271
17 5L3R 1 A, C Signal recognition particle 54 kDa protein, chloroplastic 3702
18 4C7O 1 A, C SIGNAL RECOGNITION PARTICLE PROTEIN RESIDUES 1-296 562
19 3ZN8 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG, RESIDUES 2-295 562 3.6.5.4 | Details
20 2XKV 1 A SIGNAL RECOGNITION PARTICLE PROTEIN NG DOMAIN, RESIDUES 1-294 562 3.6.5.4 | Details
21 1RY1 12 U Signal recognition particle protein 271