Sequence Similarity Clusters for the Entities in PDB 4C4W

Entity #1 | Chains: A,B,E,F
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14512
95 % 17 63 370 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 0.8
PDBFlex
90 % 17 63 393
70 % 17 65 409
50 % 17 65 479
40 % 17 65 521
30 % 17 65 518
Entity #2 | Chains: C,G
50S RIBOSOMAL PROTEIN L7AE protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 3863
95 % 2 6 3938 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 6 3994
70 % 2 6 3940
50 % 47 107 387
40 % 54 128 284
30 % 54 130 291
Entity #3 | Chains: D,H
TSKT-23 rna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures