Sequence Similarity Clusters for the Entities in PDB 4C4W

Entity #1 | Chains: A,B,E,F
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 61 342
95 % 17 63 410 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 0.8
PDBFlex
90 % 17 63 442
70 % 21 69 400
50 % 21 69 473
40 % 21 69 513
30 % 21 69 512
Entity #2 | Chains: C,G
50S RIBOSOMAL PROTEIN L7AE protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 3249
95 % 2 7 3558 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 7 3619
70 % 2 7 3562
50 % 47 108 412
40 % 54 133 331
30 % 68 292 155
Entity #3 | Chains: D,H
TSKT-23 rna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures