Sequence Similarity Clusters for the Entities in PDB 4C4W

Entity #1 | Chains: A,B,E,F
U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 61 330
95 % 17 63 395 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 0.8
PDBFlex
90 % 17 63 419
70 % 21 69 394
50 % 21 69 464
40 % 21 69 502
30 % 21 69 501
Entity #2 | Chains: C,G
50S RIBOSOMAL PROTEIN L7AE protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3685
95 % 2 6 4021 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 6 4083
70 % 2 6 3998
50 % 47 107 409
40 % 54 130 322
30 % 68 280 158
Entity #3 | Chains: D,H
TSKT-23 rna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures