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Structure of Thermus thermophilus 50S ribosome
Sequence Clustering and Redundancy Reduction Results
4BYE
Sequence Clusters for the Sequence Entities in PDB 4BYE
Entity #1: Chains: 0 - 50S RIBOSOMAL PROTEIN L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 149 78
95% 92 165 92
90% 92 165 101
70% 92 165 125
50% 135 302 63
40% 135 302 83
30% 135 302 103
Entity #10: Chains: 9 - 50S RIBOSOMAL PROTEIN L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 118 129
95% 63 118 188
90% 63 118 201
70% 67 144 180
50% 106 252 102
40% 106 252 128
30% 106 252 149
Entity #11: Chains: A - RNA (2848-MER) rna, length: 2848 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: B - RNA (119-MER) rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: C - 50S RIBOSOMAL PROTEIN L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 68 312
95% 44 92 299
90% 44 93 313
70% 44 93 334
50% 45 130 244
40% 45 130 270
30% 50 172 208
Entity #14: Chains: D - 50S RIBOSOMAL PROTEIN L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 58
95% 91 164 100
90% 91 164 108
70% 95 186 111
50% 134 297 70
40% 134 297 94
30% 134 297 115
Entity #15: Chains: E - 50S RIBOSOMAL PROTEIN L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 59
95% 91 164 102
90% 91 164 110
70% 91 164 131
50% 134 302 66
40% 134 302 88
30% 134 303 107
Entity #16: Chains: F - 50S RIBOSOMAL PROTEIN L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 148 84
95% 91 164 101
90% 91 164 109
70% 91 164 130
50% 95 191 145
40% 95 191 173
30% 135 304 104
Entity #17: Chains: G - 50S RIBOSOMAL PROTEIN L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 149 81
95% 92 165 95
90% 92 165 103
70% 96 187 109
50% 136 302 64
40% 136 302 84
30% 136 302 105
Entity #18: Chains: H - 50S RIBOSOMAL PROTEIN L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 61
95% 91 164 103
90% 91 164 111
70% 91 164 132
50% 95 196 136
40% 134 306 80
30% 224 432 55
Entity #19: Chains: I - 50S RIBOSOMAL PROTEIN L9 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 110 151
95% 80 132 164
90% 80 132 176
70% 80 132 207
50% 81 137 236
40% 112 242 132
30% 112 242 152
Entity #2: Chains: 1 - 50S RIBOSOMAL PROTEIN L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 139 107
95% 91 161 118
90% 91 161 126
70% 91 161 145
50% 91 161 183
40% 91 161 214
30% 91 161 233
Entity #20: Chains: J - 50S RIBOSOMAL PROTEIN L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: N - 50S RIBOSOMAL PROTEIN L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 159 71
95% 91 159 120
90% 91 159 128
70% 91 159 148
50% 130 279 85
40% 130 279 108
30% 130 280 131
Entity #22: Chains: O - 50S RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 145 97
95% 91 164 106
90% 91 164 114
70% 95 186 112
50% 135 310 58
40% 135 311 75
30% 231 443 48
Entity #23: Chains: P - 50S RIBOSOMAL PROTEIN L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 62
95% 91 164 104
90% 91 164 112
70% 91 164 133
50% 91 166 171
40% 134 299 91
30% 230 435 53
Entity #24: Chains: Q - 50S RIBOSOMAL PROTEIN L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 149 83
95% 91 165 98
90% 91 165 106
70% 95 190 108
50% 134 301 68
40% 134 301 90
30% 134 301 110
Entity #25: Chains: R - 50S RIBOSOMAL PROTEIN L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 169 49
95% 92 169 86
90% 92 169 95
70% 92 169 115
50% 135 301 59
40% 135 303 77
30% 135 305 99
Entity #26: Chains: S - 50S RIBOSOMAL PROTEIN L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 143 100
95% 91 143 143
90% 91 143 155
70% 91 143 181
50% 134 298 69
40% 134 298 93
30% 134 298 113
Entity #27: Chains: T - 50S RIBOSOMAL PROTEIN L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 148 85
95% 91 164 105
90% 91 164 113
70% 91 164 134
50% 91 164 176
40% 91 164 208
30% 91 164 227
Entity #28: Chains: U - 50S RIBOSOMAL PROTEIN L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 156 75
95% 91 164 107
90% 91 164 115
70% 91 164 135
50% 135 304 60
40% 135 305 79
30% 135 305 101
Entity #29: Chains: V - 50S RIBOSOMAL PROTEIN L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 64
95% 91 164 109
90% 91 164 117
70% 91 164 137
50% 95 192 144
40% 134 299 92
30% 134 299 112
Entity #3: Chains: 2 - 50S RIBOSOMAL PROTEIN L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 152 79
95% 91 155 124
90% 91 155 132
70% 91 155 154
50% 91 155 197
40% 130 274 115
30% 134 298 114
Entity #30: Chains: W - 50S RIBOSOMAL PROTEIN L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 171 52
95% 93 172 87
90% 93 172 98
70% 93 172 119
50% 132 284 79
40% 132 284 103
30% 132 286 125
Entity #31: Chains: X - 50S RIBOSOMAL PROTEIN L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 165 57
95% 91 165 99
90% 91 165 107
70% 91 165 129
50% 95 189 148
40% 134 305 82
30% 201 383 70
Entity #32: Chains: Y - 50S RIBOSOMAL PROTEIN L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 63
95% 91 164 108
90% 91 164 116
70% 91 164 136
50% 91 166 172
40% 130 279 109
30% 130 281 130
Entity #33: Chains: Z - 50S RIBOSOMAL PROTEIN L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 60
95% 92 165 94
90% 92 165 102
70% 92 165 127
50% 92 165 170
40% 92 165 203
30% 92 165 223
Entity #4: Chains: 3 - 50S RIBOSOMAL PROTEIN L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 169 54
95% 92 169 91
90% 92 169 100
70% 92 169 122
50% 92 169 167
40% 135 303 86
30% 135 303 106
Entity #5: Chains: 4 - 50S RIBOSOMAL PROTEIN L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 134 110
95% 90 134 160
90% 90 134 172
70% 90 134 203
50% 91 172 166
40% 91 172 194
30% 91 172 217
Entity #6: Chains: 5 - 50S RIBOSOMAL PROTEIN L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 148 86
95% 91 156 123
90% 91 156 131
70% 91 156 152
50% 95 188 150
40% 134 296 96
30% 134 296 117
Entity #7: Chains: 6 - 50S RIBOSOMAL PROTEIN L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 162 69
95% 91 162 115
90% 91 162 123
70% 91 162 143
50% 91 163 180
40% 133 294 97
30% 133 294 118
Entity #8: Chains: 7 - 50S RIBOSOMAL PROTEIN L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 66
95% 91 164 111
90% 91 164 119
70% 91 164 139
50% 91 164 177
40% 91 164 209
30% 91 164 228
Entity #9: Chains: 8 - 50S RIBOSOMAL PROTEIN L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 65
95% 91 164 110
90% 91 164 118
70% 91 164 138
50% 95 190 146
40% 95 190 174
30% 95 190 194
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.