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Structure of Thermus thermophilus 30s ribosome
Sequence Clustering and Redundancy Reduction Results
4BYD
Sequence Clusters for the Sequence Entities in PDB 4BYD
Entity #1: Chains: A - RNA (1504-MER) rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 257 29
95% 149 259 47
90% 149 259 51
70% 149 259 61
50% 194 374 34
40% 194 374 46
30% 194 379 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 260 26
95% 149 260 43
90% 149 260 46
70% 149 260 57
50% 188 368 42
40% 192 408 40
30% 192 408 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 229 36
95% 149 267 36
90% 149 267 38
70% 188 380 24
50% 188 380 33
40% 188 380 45
30% 188 380 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 261 22
95% 149 261 41
90% 149 261 43
70% 149 261 55
50% 188 370 39
40% 188 370 53
30% 190 406 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 259 27
95% 149 259 48
90% 149 259 52
70% 149 259 62
50% 149 259 97
40% 149 259 123
30% 149 259 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 263 20
95% 153 268 35
90% 153 268 37
70% 153 268 48
50% 195 381 32
40% 195 381 43
30% 195 381 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 255 30
95% 149 260 45
90% 149 260 48
70% 149 260 59
50% 149 260 94
40% 149 260 120
30% 188 368 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 162 57
95% 148 254 50
90% 149 258 53
70% 149 258 63
50% 149 258 99
40% 149 258 124
30% 149 258 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 175 50
95% 143 224 63
90% 143 224 67
70% 143 224 81
50% 143 224 115
40% 143 224 141
30% 143 224 162
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 226 37
95% 143 226 62
90% 143 226 65
70% 143 226 80
50% 189 371 38
40% 189 371 51
30% 189 371 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 260 24
95% 149 261 38
90% 149 261 41
70% 149 261 52
50% 149 261 92
40% 188 368 55
30% 188 368 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 198 43
95% 149 259 46
90% 149 259 50
70% 149 259 60
50% 149 259 96
40% 149 259 122
30% 149 259 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 241 34
95% 149 241 55
90% 149 241 58
70% 149 241 69
50% 149 241 107
40% 149 241 130
30% 149 241 151
Entity #22: Chains: V,W - RNA (77-MER) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - BACTERIAL TOXIN YOEB rna, length: 10 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y,Z - BACTERIAL TOXIN YOEB protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 2414
95% 5 5 3020
90% 5 5 3060
70% 5 5 3063
50% 5 5 3059
40% 5 5 2966
30% 5 5 2752
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 142 222 39
95% 142 222 65
90% 142 222 69
70% 142 222 82
50% 157 285 76
40% 157 285 100
30% 157 285 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 253 31
95% 149 261 39
90% 149 261 42
70% 149 261 53
50% 188 368 40
40% 188 369 54
30% 188 369 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 260 25
95% 149 260 42
90% 149 260 44
70% 149 260 56
50% 189 372 37
40% 189 372 50
30% 189 374 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 265 18
95% 157 271 33
90% 157 271 35
70% 157 271 47
50% 157 271 87
40% 157 271 112
30% 183 318 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 264 19
95% 150 265 37
90% 150 265 39
70% 150 265 49
50% 176 313 56
40% 176 314 72
30% 176 314 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 260 21
95% 149 260 40
90% 150 264 40
70% 150 264 50
50% 191 374 35
40% 192 376 47
30% 195 413 52
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 147 79
95% 149 260 44
90% 149 260 47
70% 149 260 58
50% 188 368 41
40% 188 368 56
30% 190 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.