POP-OUT | CLOSE
 
Structure of Thermus thermophilus 50S ribosome
Sequence Clustering and Redundancy Reduction Results
4BYC
Sequence Clusters for the Sequence Entities in PDB 4BYC
Entity #1: Chains: 0 - 50S RIBOSOMAL PROTEIN L27 protein, length: 85 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 136 95
95% 82 152 102
90% 82 152 110
70% 82 152 134
50% 125 288 67
40% 125 288 88
30% 125 288 108
Entity #10: Chains: 9 - 50S RIBOSOMAL PROTEIN L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 105 183
95% 53 105 261
90% 53 105 271
70% 57 131 206
50% 96 238 109
40% 96 238 132
30% 96 238 152
Entity #11: Chains: A - RNA (2848-MER) rna, length: 2848 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: B - RNA (119-MER) rna, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: C - 50S RIBOSOMAL PROTEIN L1 protein, length: 229 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 66 331
95% 43 90 300
90% 43 91 314
70% 43 91 337
50% 44 128 240
40% 44 128 269
30% 49 170 209
Entity #14: Chains: D - 50S RIBOSOMAL PROTEIN L2 protein, length: 276 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 65
95% 81 151 108
90% 81 151 116
70% 85 173 114
50% 124 283 79
40% 124 283 100
30% 124 283 122
Entity #15: Chains: E - 50S RIBOSOMAL PROTEIN L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 66
95% 81 151 110
90% 81 151 118
70% 81 151 142
50% 124 288 72
40% 124 288 92
30% 124 289 114
Entity #16: Chains: F - 50S RIBOSOMAL PROTEIN L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 135 102
95% 81 151 109
90% 81 151 117
70% 81 151 141
50% 85 178 150
40% 85 178 178
30% 125 290 109
Entity #17: Chains: G - 50S RIBOSOMAL PROTEIN L5 protein, length: 182 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 136 97
95% 82 152 105
90% 82 152 113
70% 86 174 113
50% 126 288 68
40% 126 288 89
30% 126 288 110
Entity #18: Chains: H - 50S RIBOSOMAL PROTEIN L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 68
95% 81 151 111
90% 81 151 120
70% 81 151 143
50% 85 183 146
40% 124 292 85
30% 193 397 60
Entity #19: Chains: I - 50S RIBOSOMAL PROTEIN L9 protein, length: 148 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 100 198
95% 71 122 176
90% 71 122 186
70% 71 122 220
50% 72 127 253
40% 103 231 137
30% 103 231 158
Entity #2: Chains: 1 - 50S RIBOSOMAL PROTEIN L28 protein, length: 98 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 126 114
95% 81 148 123
90% 81 148 131
70% 81 148 152
50% 81 148 198
40% 81 148 233
30% 81 148 250
Entity #20: Chains: J - 50S RIBOSOMAL PROTEIN L10 protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: N - 50S RIBOSOMAL PROTEIN L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 146 76
95% 81 146 125
90% 81 146 135
70% 81 146 157
50% 120 265 90
40% 120 265 114
30% 120 266 139
Entity #22: Chains: O - 50S RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 132 107
95% 81 151 114
90% 81 151 123
70% 85 173 115
50% 125 296 62
40% 125 297 81
30% 194 402 54
Entity #23: Chains: P - 50S RIBOSOMAL PROTEIN L15 protein, length: 150 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 69
95% 81 151 112
90% 81 151 121
70% 81 151 144
50% 81 153 190
40% 124 285 95
30% 193 394 61
Entity #24: Chains: Q - 50S RIBOSOMAL PROTEIN L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 136 101
95% 81 152 106
90% 81 152 114
70% 85 177 110
50% 124 287 73
40% 124 287 94
30% 124 287 116
Entity #25: Chains: R - 50S RIBOSOMAL PROTEIN L17 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 156 53
95% 82 156 91
90% 82 156 99
70% 82 156 122
50% 125 287 64
40% 125 289 82
30% 125 291 102
Entity #26: Chains: S - 50S RIBOSOMAL PROTEIN L18 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 132 108
95% 81 132 157
90% 81 132 168
70% 81 132 200
50% 124 284 78
40% 124 284 99
30% 124 284 119
Entity #27: Chains: T - 50S RIBOSOMAL PROTEIN L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 135 103
95% 81 151 113
90% 81 151 122
70% 81 151 145
50% 81 151 194
40% 81 151 229
30% 81 151 244
Entity #28: Chains: U - 50S RIBOSOMAL PROTEIN L20 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 143 79
95% 81 151 115
90% 81 151 124
70% 81 151 146
50% 125 290 66
40% 125 291 84
30% 125 291 105
Entity #29: Chains: V - 50S RIBOSOMAL PROTEIN L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 71
95% 81 151 117
90% 81 151 126
70% 81 151 148
50% 85 179 148
40% 124 285 96
30% 124 285 118
Entity #3: Chains: 2 - 50S RIBOSOMAL PROTEIN L29 protein, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 139 96
95% 81 142 130
90% 81 142 143
70% 81 142 167
50% 81 142 212
40% 120 260 118
30% 124 284 120
Entity #30: Chains: W - 50S RIBOSOMAL PROTEIN L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 158 60
95% 83 159 96
90% 83 159 104
70% 83 159 127
50% 122 270 87
40% 122 270 108
30% 122 272 130
Entity #31: Chains: X - 50S RIBOSOMAL PROTEIN L23 protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 152 64
95% 81 152 107
90% 81 152 115
70% 81 152 139
50% 85 176 153
40% 124 291 87
30% 191 369 73
Entity #32: Chains: Y - 50S RIBOSOMAL PROTEIN L24 protein, length: 110 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 70
95% 81 151 116
90% 81 151 125
70% 81 151 147
50% 81 153 191
40% 120 265 115
30% 120 267 137
Entity #33: Chains: Z - 50S RIBOSOMAL PROTEIN L25 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 67
95% 82 152 104
90% 82 152 112
70% 82 152 137
50% 82 152 189
40% 82 152 227
30% 82 152 238
Entity #4: Chains: 3 - 50S RIBOSOMAL PROTEIN L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 158 58
95% 82 158 98
90% 82 158 106
70% 82 158 129
50% 82 158 175
40% 125 291 86
30% 125 291 107
Entity #5: Chains: 4 - 50S RIBOSOMAL PROTEIN L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 125 117
95% 80 125 171
90% 80 125 180
70% 80 125 216
50% 81 163 171
40% 81 163 205
30% 81 163 224
Entity #6: Chains: 5 - 50S RIBOSOMAL PROTEIN L32 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 135 104
95% 81 143 128
90% 81 143 140
70% 81 143 164
50% 85 175 160
40% 124 282 102
30% 124 282 124
Entity #7: Chains: 6 - 50S RIBOSOMAL PROTEIN L33 protein, length: 54 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 149 75
95% 81 149 122
90% 81 149 130
70% 81 149 151
50% 81 150 197
40% 123 280 104
30% 123 280 126
Entity #8: Chains: 7 - 50S RIBOSOMAL PROTEIN L34 protein, length: 49 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 73
95% 81 151 119
90% 81 151 128
70% 81 151 150
50% 81 151 195
40% 81 151 230
30% 81 151 245
Entity #9: Chains: 8 - 50S RIBOSOMAL PROTEIN L35 protein, length: 65 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 151 72
95% 81 151 118
90% 81 151 127
70% 81 151 149
50% 85 177 152
40% 85 177 182
30% 85 177 205
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.