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Structure of Thermus thermophilus 30s ribosome
Sequence Clustering and Redundancy Reduction Results
4BYB
Cluster # 2953 Members. Sequence cutoff: 40% Cluster size: 5 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2A6S 1 A, B, C, D Toxin yoeB 562   3.1   
2 2A6R 1 A, B, C, D, E, F Toxin yoeB 562   3.1   
3 2A6Q 2 E, F Toxin yoeB 562   3.1   
4 4BYB 25 Y, Z TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM 83333  
5 4BYD 24 Y, Z BACTERIAL TOXIN YOEB 83333  
 
Sequence Clusters for the Sequence Entities in PDB 4BYB
Entity #1: Chains: A - RNA (1504-MER) rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 252 29
95% 147 254 48
90% 147 254 51
70% 147 254 63
50% 192 369 34
40% 192 369 48
30% 192 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 255 27
95% 147 255 44
90% 147 255 47
70% 147 255 59
50% 186 363 42
40% 190 403 39
30% 190 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 224 37
95% 147 262 36
90% 147 262 38
70% 186 375 24
50% 186 375 33
40% 186 375 47
30% 186 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 256 24
95% 147 256 42
90% 147 256 45
70% 147 256 57
50% 186 365 39
40% 186 365 53
30% 188 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 254 28
95% 147 254 49
90% 147 254 52
70% 147 254 64
50% 147 254 99
40% 147 254 124
30% 147 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 258 21
95% 151 263 35
90% 151 263 37
70% 151 263 48
50% 193 376 32
40% 193 376 45
30% 193 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 250 31
95% 147 255 46
90% 147 255 49
70% 147 255 61
50% 147 255 97
40% 147 255 122
30% 186 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 157 62
95% 146 249 51
90% 147 253 53
70% 147 253 65
50% 147 253 100
40% 147 253 126
30% 147 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 172 49
95% 141 221 64
90% 141 221 68
70% 141 221 81
50% 141 221 116
40% 141 221 144
30% 141 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 223 38
95% 141 223 63
90% 141 223 67
70% 141 223 80
50% 187 366 38
40% 187 366 52
30% 187 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 255 25
95% 147 256 39
90% 147 256 43
70% 147 256 55
50% 147 256 96
40% 186 363 55
30% 186 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 193 43
95% 147 254 47
90% 147 254 50
70% 147 254 62
50% 147 254 98
40% 147 254 123
30% 147 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 238 34
95% 147 238 55
90% 147 238 59
70% 147 238 71
50% 147 238 110
40% 147 238 133
30% 147 238 153
Entity #22: Chains: V - RNA (77-MER) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - RNA (77-MER) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3' rna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Y,Z - TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 2406
95% 4 5 3007
90% 4 5 3047
70% 4 5 3047
50% 4 5 3044
40% 4 5 2953
30% 4 5 2745
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 219 39
95% 140 219 66
90% 140 219 70
70% 140 219 83
50% 155 282 81
40% 155 282 101
30% 155 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 248 32
95% 147 256 40
90% 147 256 44
70% 147 256 56
50% 186 363 40
40% 186 364 54
30% 186 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 255 26
95% 147 255 43
90% 147 255 46
70% 147 255 58
50% 187 367 37
40% 187 367 51
30% 187 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 260 18
95% 155 266 34
90% 155 266 36
70% 155 266 47
50% 155 266 88
40% 155 266 112
30% 181 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 259 20
95% 148 260 37
90% 148 260 39
70% 148 260 51
50% 174 308 57
40% 174 309 74
30% 174 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 255 23
95% 147 255 41
90% 148 259 40
70% 148 259 52
50% 189 369 36
40% 190 371 49
30% 193 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 142 82
95% 147 255 45
90% 147 255 48
70% 147 255 60
50% 186 363 41
40% 186 363 56
30% 188 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.