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Structure of Thermus thermophilus 30s ribosome
Sequence Clustering and Redundancy Reduction Results
4BYB
Cluster # 2970 Members. Sequence cutoff: 40% Cluster size: 5 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 2A6S 1 A, B, C, D Toxin yoeB 562   3.1   
2 2A6R 1 A, B, C, D, E, F Toxin yoeB 562   3.1   
3 2A6Q 2 E, F Toxin yoeB 562   3.1   
4 4BYB 25 Y, Z TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM 83333  
5 4BYD 24 Y, Z BACTERIAL TOXIN YOEB 83333  
 
Sequence Clusters for the Sequence Entities in PDB 4BYB
Entity #1: Chains: A - RNA (1504-MER) rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 265 27
95% 156 267 47
90% 156 267 49
70% 156 267 59
50% 201 382 34
40% 201 382 45
30% 201 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 268 25
95% 156 268 43
90% 156 268 45
70% 156 268 55
50% 195 376 41
40% 199 416 40
30% 199 416 52
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 237 35
95% 156 275 35
90% 156 275 37
70% 195 388 24
50% 195 388 33
40% 195 388 44
30% 195 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 269 22
95% 156 269 41
90% 156 269 43
70% 156 269 53
50% 195 378 38
40% 195 378 51
30% 197 414 55
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 267 26
95% 156 267 48
90% 156 267 50
70% 156 267 60
50% 156 267 93
40% 156 267 119
30% 156 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 271 20
95% 160 276 32
90% 160 276 34
70% 160 276 47
50% 202 389 32
40% 202 389 43
30% 202 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 263 28
95% 156 268 45
90% 156 268 47
70% 156 268 57
50% 156 268 91
40% 156 268 117
30% 195 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 170 53
95% 155 262 49
90% 156 266 51
70% 156 266 61
50% 156 266 94
40% 156 266 120
30% 156 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 183 47
95% 150 232 61
90% 150 232 64
70% 150 232 78
50% 150 232 113
40% 150 232 138
30% 150 232 158
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 234 37
95% 150 234 59
90% 150 234 63
70% 150 234 77
50% 196 379 37
40% 196 379 49
30% 196 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 268 23
95% 156 269 38
90% 156 269 41
70% 156 269 51
50% 156 269 90
40% 195 376 53
30% 195 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 206 42
95% 156 267 46
90% 156 267 48
70% 156 267 58
50% 156 267 92
40% 156 267 118
30% 156 267 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 249 33
95% 156 249 52
90% 156 249 55
70% 156 249 66
50% 156 249 103
40% 156 249 130
30% 156 249 150
Entity #22: Chains: V - RNA (77-MER) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - RNA (77-MER) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3' rna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Y,Z - TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 2427
95% 4 5 3033
90% 4 5 3071
70% 4 5 3070
50% 4 5 3065
40% 4 5 2970
30% 4 5 2760
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 230 38
95% 149 230 62
90% 149 230 65
70% 149 230 79
50% 164 293 73
40% 164 293 97
30% 164 293 118
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 261 29
95% 156 269 39
90% 156 269 42
70% 156 269 52
50% 195 376 39
40% 195 377 52
30% 195 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 268 24
95% 156 268 42
90% 156 268 44
70% 156 268 54
50% 196 380 36
40% 196 380 48
30% 196 382 70
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 273 18
95% 164 279 29
90% 164 279 30
70% 164 279 44
50% 164 279 82
40% 164 279 106
30% 190 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 272 19
95% 157 273 36
90% 157 273 38
70% 157 273 49
50% 183 321 56
40% 183 322 73
30% 183 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 268 21
95% 156 268 40
90% 157 272 39
70% 157 272 50
50% 198 382 35
40% 199 384 46
30% 202 421 51
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 105 155 76
95% 156 268 44
90% 156 268 46
70% 156 268 56
50% 195 376 40
40% 195 376 54
30% 197 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.