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Structure of Thermus thermophilus 30s ribosome
Sequence Clustering and Redundancy Reduction Results
4BYB
Cluster # 49 Members. Sequence cutoff: 100% Cluster size: 172 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4LFB 18 R ribosomal protein S18 300852  
2 4QCM 18 R 30S ribosomal protein S18 300852  
3 4QCO 18 R 30S ribosomal protein S18 300852  
4 4QCQ 18 R 30S ribosomal protein S18 300852  
5 4QCS 18 R 30S ribosomal protein S18 300852  
6 3V2C 18 R 30S Ribosomal Protein S18 274  
7 3V2E 18 R 30S Ribosomal Protein S18 274  
8 4JI1 18 R RIBOSOMAL PROTEIN S18 300852  
9 4DR6 18 R 30S ribosomal protein S18 300852  
10 4LF7 18 R ribosomal protein S18 300852  
11 4LF8 18 R ribosomal protein S18 300852  
12 2UUB 18 R 30S RIBOSOMAL PROTEIN S18 300852  
13 4DV6 18 R ribosomal protein S18 300852  
14 4DR5 18 R 30S ribosomal protein S18 300852  
15 4DR2 18 R 30S ribosomal protein S18 300852  
16 4LF9 18 R ribosomal protein S18 300852  
17 4DUY 18 R ribosomal protein S18 300852  
18 4DV7 18 R ribosomal protein S18 300852  
19 3UZ6 18 U 30S RIBOSOMAL PROTEIN S18 300852  
20 3UZ7 18 U 30S RIBOSOMAL PROTEIN S18 300852  
21 4DR3 18 R 30S ribosomal protein S18 300852  
22 4CR1 18 R 30S RIBOSOMAL PROTEIN S18 300852  
23 4JI3 18 R RIBOSOMAL PROTEIN S18 300852  
24 4JI6 18 R RIBOSOMAL PROTEIN S18 300852  
25 4JI8 18 R RIBOSOMAL PROTEIN S18 300852  
26 2UXC 18 R RIBOSOMAL PROTEIN S18 300852  
27 4NVU 18 R 30S Ribosomal Protein S18 274  
28 4NVW 18 R 30S Ribosomal Protein S18 274  
29 4LF4 18 R ribosomal protein S18 300852  
30 4LF6 18 R ribosomal protein S18 300852  
31 4JI7 18 R RIBOSOMAL PROTEIN S18 300852  
32 3UYD 18 U 30S RIBOSOMAL PROTEIN S18 300852  
33 3UYF 18 U 30S RIBOSOMAL PROTEIN S18 300852  
34 2UUA 18 R 30S RIBOSOMAL PROTEIN S18 300852  
35 3TVF 18 U 30S RIBOSOMAL PROTEIN S18 300852  
36 3TVG 18 U 30S RIBOSOMAL PROTEIN S18 300852  
37 4DH9 18 R 30S Ribosomal Protein S18 274  
38 4DHB 18 R 30S Ribosomal Protein S18 274  
39 4QCY 18 R 30S ribosomal protein S18 300852  
40 4QD0 18 R 30S ribosomal protein S18 300852  
41 1VX8 18 R 30S ribosomal protein S18 300852  
42 1VXI 18 R 30S ribosomal protein S18 300852  
43 4DR1 18 R 30S ribosomal protein S18 300852  
44 4LFA 18 R ribosomal protein S18 300852  
45 4DV4 18 R ribosomal protein S18 300852  
46 4JI0 18 R ribosomal protein S18 300852  
47 4NVY 18 R 30S Ribosomal Protein S18 274  
48 4NW0 18 R 30S Ribosomal Protein S18 274  
49 4JI2 18 R RIBOSOMAL PROTEIN S18 300852  
50 4DR7 18 R 30S ribosomal protein S18 300852  
51 4DUZ 18 R ribosomal protein S18 300852  
52 3V22 18 R 30S Ribosomal Protein S18 300852  
53 3V24 18 R 30S ribosomal protein S18 300852  
54 4DV3 18 R ribosomal protein S18 300852  
55 4DV5 18 R ribosomal protein S18 300852  
56 2UUC 18 R 30S RIBOSOMAL PROTEIN S18 300852  
57 4LFC 18 R ribosomal protein S18 300852  
58 4JI4 18 R RIBOSOMAL PROTEIN S18 300852  
59 4QCU 18 R 30S ribosomal protein S18 300852  
60 4QCW 18 R 30S ribosomal protein S18 300852  
61 4DV0 18 R ribosomal protein S18 300852  
62 4G5T 18 U 30S RIBOSOMAL PROTEIN S18 300852  
63 4G5V 18 U 30S RIBOSOMAL PROTEIN S18 300852  
64 3I8G 18 U 30S ribosomal protein S18 300852  
65 3I8H 18 U 30S ribosomal protein S18 300852  
66 3UZL 18 U 30S RIBOSOMAL PROTEIN S18 300852  
67 3UZM 18 U 30S RIBOSOMAL PROTEIN S18 300852  
68 4DV2 18 R ribosomal protein S18 300852  
69 4DV1 18 R ribosomal protein S18 300852  
70 3V26 18 R 30S Ribosomal Protein S18 300852  
71 3V28 18 R 30S Ribosomal Protein S18 300852  
72 4JI5 18 R RIBOSOMAL PROTEIN S18 300852  
73 3UZ3 18 U 30S RIBOSOMAL PROTEIN S18 300852  
74 3UZ4 18 U 30S RIBOSOMAL PROTEIN S18 300852  
75 4LF5 18 R ribosomal protein S18 300852  
76 4G5K 18 U 30S RIBOSOMAL PROTEIN S18 300852  
77 4G5M 18 U 30S RIBOSOMAL PROTEIN S18 300852  
78 2X9R 18 R 30S RIBOSOMAL PROTEIN S18 300852  
79 2X9T 18 R 30S RIBOSOMAL PROTEIN S18 300852  
80 3OHY 18 R 30S ribosomal protein S18 300852  
81 3OI0 18 R 30S ribosomal protein S18 300852  
82 3UZG 18 U 30S RIBOSOMAL PROTEIN S18 300852  
83 3UZI 18 U 30S RIBOSOMAL PROTEIN S18 300852  
84 4DR4 18 R 30S ribosomal protein S18 300852  
85 2UU9 18 R 30S RIBOSOMAL PROTEIN S18 300852  
86 4ABR 19 R 30S RIBOSOMAL PROTEIN S18 300852  
87 4NXM 18 R ribosomal protein S18 300852  
88 2XQD 18 R 30S RIBOSOMAL PROTEIN S18 300852  
89 3OHC 18 R 30S ribosomal protein S18 300852  
90 3OHD 18 R 30S ribosomal protein S18 300852  
91 3OGE 18 R 30S ribosomal protein S18 300852  
92 3OGY 18 R 30S ribosomal protein S18 300852  
93 4NXN 18 R ribosomal protein S18 300852  
94 1VXP 18 R 30S ribosomal protein S18 300852  
95 1VXS 18 R 30S ribosomal protein S18 300852  
96 2J00 18 R 30S RIBOSOMAL PROTEIN S18 300852  
97 2J02 18 R 30S RIBOSOMAL PROTEIN S18 300852  
98 3KNH 18 R 30S ribosomal protein S18 300852  
99 2Y10 18 R 30S RIBOSOMAL PROTEIN S18 300852  
100 2Y18 18 R 30S RIBOSOMAL PROTEIN S18 300852  
101 3UXS 18 R 30S ribosomal protein S18 300852  
102 3UXT 18 R 30S ribosomal protein S18 300852  
103 2XG1 18 R 30S RIBOSOMAL PROTEIN S18 300852  
104 2XFZ 18 R 30S RIBOSOMAL PROTEIN S18 300852  
105 2Y0Y 18 R 30S RIBOSOMAL PROTEIN S18 300852  
106 2Y12 18 R 30S RIBOSOMAL PROTEIN S18 300852  
107 3KIQ 17 r 30S ribosomal protein S18 300852  
108 3KIS 17 r 30S ribosomal protein S18 300852  
109 2WDG 18 R 30S RIBOSOMAL PROTEIN S18 300852  
110 2WDH 18 R 30S RIBOSOMAL PROTEIN S18 300852  
111 2WH1 18 R 30S RIBOSOMAL PROTEIN S18 300852  
112 2WH3 18 R 30S RIBOSOMAL PROTEIN S18 300852  
113 1VVL 18 R 30S ribosomal protein S18 300852  
114 1VVN 18 R 30S ribosomal protein S18 300852  
115 2Y0U 18 R 30S RIBOSOMAL PROTEIN S18 300852  
116 2Y0W 18 R 30S RIBOSOMAL PROTEIN S18 300852  
117 2WDK 18 R 30S RIBOSOMAL PROTEIN S18 300852  
118 2WDM 18 R 30S RIBOSOMAL PROTEIN S18 300852  
119 3OI2 18 R 30S ribosomal protein S18 300852  
120 3OI4 18 R 30S ribosomal protein S18 300852  
121 4BYB 18 R 30S RIBOSOMAL PROTEIN S18 300852  
122 4BYD 18 R 30S RIBOSOMAL PROTEIN S18 300852  
123 2Y14 18 R 30S RIBOSOMAL PROTEIN S18 300852  
124 2Y16 18 R 30S RIBOSOMAL PROTEIN S18 300852  
125 2UXD 18 R RIBOSOMAL PROTEIN S18 300852  
126 3I9B 18 U 30S RIBOSOMAL PROTEIN S18 300852  
127 3I9D 18 U 30S ribosomal protein S18 300852  
128 3ZN7 18 R 30S RIBOSOMAL PROTEIN S18 300852  
129 3ZND 18 R 30S RIBOSOMAL PROTEIN S18 300852  
130 4EJ9 18 R 30S ribosomal protein S18 300852  
131 4EJA 18 R 30S ribosomal protein S18 300852  
132 3KNL 18 R 30S ribosomal protein S18 300852  
133 3KNN 18 R 30S ribosomal protein S18 300852  
134 3HUW 18 R 30S ribosomal protein S18 300852  
135 3HUY 18 R 30S ribosomal protein S18 300852  
136 3KNJ 18 R 30S ribosomal protein S18 300852  
137 3KIU 17 r 30S ribosomal protein S18 300852  
138 3KIX 17 r 30S ribosomal protein S18 300852  
139 1VY0 18 R 30S ribosomal protein S18 300852  
140 1VY2 18 R 30S ribosomal protein S18 300852  
141 4B8F 18 R 30S RIBOSOMAL PROTEIN S18 300852  
142 4B8H 18 R 30S RIBOSOMAL PROTEIN S18 300852  
143 1VXK 18 R 30S ribosomal protein S18 300852  
144 1VXM 18 R 30S ribosomal protein S18 300852  
145 3F1E 20 R 30S ribosomal protein S18 274  
146 3F1G 20 R 30S ribosomal protein S18 274  
147 2WRI 18 R 30S RIBOSOMAL PROTEIN S18 300852  
148 2WRK 18 R 30S RIBOSOMAL PROTEIN S18 300852  
149 4KWZ 18 R 30S ribosomal protein S18 300852  
150 4KX1 18 R 30S ribosomal protein S18 300852  
151 1VVX 18 R 30S ribosomal protein S18 300852  
152 1VVZ 18 R 30S ribosomal protein S18 300852  
153 4OX9 18 R 30S ribosomal protein S18 300852  
154 2UXB 18 R RIBOSOMAL PROTEIN S18 300852  
155 2V46 18 R 30S RIBOSOMAL PROTEIN S18 300852  
156 2V48 18 R 30S RIBOSOMAL PROTEIN S18 300852  
157 3D5A 20 R 30S ribosomal protein S18 262724  
158 3D5C 20 R 30S ribosomal protein S18 262724  
159 1VVP 18 R 30S ribosomal protein S18 300852  
160 1VVR 18 R 30S ribosomal protein S18 300852  
161 4KVB 17 R 30S ribosomal protein S18 262724  
162 3V6U 18 R 30S ribosomal protein S18 300852  
163 3V6V 18 R 30S ribosomal protein S18 300852  
164 1VVT 18 R 30S ribosomal protein S18 300852  
165 1VVV 18 R 30S ribosomal protein S18 300852  
166 2WRN 18 R 30S RIBOSOMAL PROTEIN S18 300852  
167 2WRQ 18 R 30S RIBOSOMAL PROTEIN S18 300852  
168 3ZVO 18 R 30S RIBOSOMAL PROTEIN S18 300852  
169 2QNH 21 s 30S ribosomal protein S18 262724  
170 2OW8 21 s 30S ribosomal protein S18 262724  
171 2XUY 18 R 30S RIBOSOMAL PROTEIN S18 300852  
172 2XSY 18 R 30S RIBOSOMAL PROTEIN S18 300852  
 
Sequence Clusters for the Sequence Entities in PDB 4BYB
Entity #1: Chains: A - RNA (1504-MER) rna, length: 1504 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 252 29
95% 147 254 48
90% 147 254 51
70% 147 254 63
50% 192 369 34
40% 192 369 48
30% 192 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 255 27
95% 147 255 44
90% 147 255 47
70% 147 255 59
50% 186 363 42
40% 190 403 39
30% 190 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 224 37
95% 147 262 36
90% 147 262 38
70% 186 375 24
50% 186 375 33
40% 186 375 47
30% 186 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 256 24
95% 147 256 42
90% 147 256 45
70% 147 256 57
50% 186 365 39
40% 186 365 53
30% 188 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 254 28
95% 147 254 49
90% 147 254 52
70% 147 254 64
50% 147 254 99
40% 147 254 124
30% 147 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 258 21
95% 151 263 35
90% 151 263 37
70% 151 263 48
50% 193 376 32
40% 193 376 45
30% 193 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 250 31
95% 147 255 46
90% 147 255 49
70% 147 255 61
50% 147 255 97
40% 147 255 122
30% 186 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 157 62
95% 146 249 51
90% 147 253 53
70% 147 253 65
50% 147 253 100
40% 147 253 126
30% 147 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 172 49
95% 141 221 64
90% 141 221 68
70% 141 221 81
50% 141 221 116
40% 141 221 144
30% 141 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 223 38
95% 141 223 63
90% 141 223 67
70% 141 223 80
50% 187 366 38
40% 187 366 52
30% 187 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 255 25
95% 147 256 39
90% 147 256 43
70% 147 256 55
50% 147 256 96
40% 186 363 55
30% 186 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 193 43
95% 147 254 47
90% 147 254 50
70% 147 254 62
50% 147 254 98
40% 147 254 123
30% 147 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 238 34
95% 147 238 55
90% 147 238 59
70% 147 238 71
50% 147 238 110
40% 147 238 133
30% 147 238 153
Entity #22: Chains: V - RNA (77-MER) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: W - RNA (77-MER) rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: X - 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3' rna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #25: Chains: Y,Z - TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 2406
95% 4 5 3007
90% 4 5 3047
70% 4 5 3047
50% 4 5 3044
40% 4 5 2953
30% 4 5 2745
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 219 39
95% 140 219 66
90% 140 219 70
70% 140 219 83
50% 155 282 81
40% 155 282 101
30% 155 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 145 248 32
95% 147 256 40
90% 147 256 44
70% 147 256 56
50% 186 363 40
40% 186 364 54
30% 186 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 255 26
95% 147 255 43
90% 147 255 46
70% 147 255 58
50% 187 367 37
40% 187 367 51
30% 187 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 260 18
95% 155 266 34
90% 155 266 36
70% 155 266 47
50% 155 266 88
40% 155 266 112
30% 181 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 259 20
95% 148 260 37
90% 148 260 39
70% 148 260 51
50% 174 308 57
40% 174 309 74
30% 174 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 255 23
95% 147 255 41
90% 148 259 40
70% 148 259 52
50% 189 369 36
40% 190 371 49
30% 193 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 142 82
95% 147 255 45
90% 147 255 48
70% 147 255 60
50% 186 363 41
40% 186 363 56
30% 188 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.