Sequence Similarity Clusters for the Entities in PDB 4BY9

Entity #1 | Chains: A,B
SSR26 rna, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,F,I,L
NOP5/NOP56 RELATED PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 4055
95 % 6 6 4379
90 % 6 6 4392
70 % 6 6 4333
50 % 6 6 4183
40 % 8 8 2892
30 % 8 8 2702
Entity #3 | Chains: D,G,J,M
50S RIBOSOMAL PROTEIN L7AE protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 15 1690
95 % 16 18 1685
90 % 16 18 1727
70 % 19 21 1401
50 % 94 97 347
40 % 107 111 309
30 % 107 113 323
Entity #4 | Chains: E,H,K,N
FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 4902
95 % 7 7 4444
90 % 7 7 4461
70 % 7 7 4407
50 % 14 14 2198
40 % 15 15 2074
30 % 15 15 1979
Entity #5 | Chains: W,X,Y,Z
5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.