Sequence Similarity Clusters for the Entities in PDB 4BY9

Entity #1 | Chains: A,B
SSR26 rna, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,F,I,L
NOP5/NOP56 RELATED PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 5932
95 % 6 6 5431
90 % 6 6 5468
70 % 6 6 5351
50 % 6 6 5082
40 % 12 12 2063
30 % 12 12 1955
Entity #3 | Chains: D,G,J,M
50S RIBOSOMAL PROTEIN L7AE protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 17 2104
95 % 20 22 1677
90 % 20 22 1714
70 % 27 29 1092
50 % 104 107 393
40 % 124 128 309
30 % 252 271 153
Entity #4 | Chains: E,H,K,N
FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 6608
95 % 7 7 5432
90 % 7 7 5469
70 % 7 7 5352
50 % 18 18 1684
40 % 19 19 1613
30 % 19 19 1595
Entity #5 | Chains: W,X,Y,Z
5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures