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The structure of the Box CD enzyme reveals regulation of rRNA methylation
Sequence Clustering and Redundancy Reduction Results
4BY9
Sequence Clusters for the Sequence Entities in PDB 4BY9
Entity #1: Chains: A,B - SSR26 rna, length: 72 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: C,F,I,L - NOP5/NOP56 RELATED PROTEIN protein, length: 366 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 3710
95% 6 6 4013
90% 6 6 4043
70% 6 6 3998
50% 6 6 3853
40% 8 8 2688
30% 8 8 2515
Entity #3: Chains: D,G,J,M - 50S RIBOSOMAL PROTEIN L7AE protein, length: 121 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 15 1539
95% 15 17 1703
90% 15 17 1746
70% 18 20 1375
50% 92 95 327
40% 101 105 302
30% 101 107 309
Entity #4: Chains: E,H,K,N - FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE protein, length: 227 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 4498
95% 7 7 4076
90% 7 7 4109
70% 7 7 4070
50% 14 14 2044
40% 15 15 1931
30% 15 15 1842
Entity #5: Chains: W,X,Y,Z - 5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.