Sequence Similarity Clusters for the Entities in PDB 4BY9

Entity #1 | Chains: A,B
SSR26 rna, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,F,I,L
NOP5/NOP56 RELATED PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 4929
95 % 6 6 5239
90 % 6 6 5266
70 % 6 6 5148
50 % 6 6 4913
40 % 12 12 2015
30 % 12 12 1940
Entity #3 | Chains: D,G,J,M
50S RIBOSOMAL PROTEIN L7AE protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 17 1820
95 % 20 22 1631
90 % 20 22 1662
70 % 27 29 1075
50 % 104 107 387
40 % 124 128 284
30 % 124 130 291
Entity #4 | Chains: E,H,K,N
FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 5936
95 % 7 7 5325
90 % 7 7 5353
70 % 7 7 5245
50 % 18 18 1658
40 % 19 19 1594
30 % 19 19 1574
Entity #5 | Chains: W,X,Y,Z
5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures