Sequence Similarity Clusters for the Entities in PDB 4BY9

Entity #1 | Chains: A,B
SSR26 rna, length: 72 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,F,I,L
NOP5/NOP56 RELATED PROTEIN protein, length: 366 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 4753
95 % 6 6 5070
90 % 6 6 5091
70 % 6 6 4985
50 % 6 6 4771
40 % 12 12 1949
30 % 12 12 1878
Entity #3 | Chains: D,G,J,M
50S RIBOSOMAL PROTEIN L7AE protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 17 1746
95 % 18 20 1821
90 % 18 20 1857
70 % 25 27 1127
50 % 102 105 379
40 % 122 126 287
30 % 122 128 289
Entity #4 | Chains: E,H,K,N
FIBRILLARIN-LIKE RRNA/TRNA 2'-O-METHYLTRANSFERASE protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 5745
95 % 7 7 5150
90 % 7 7 5173
70 % 7 7 5075
50 % 18 18 1604
40 % 19 19 1553
30 % 19 19 1524
Entity #5 | Chains: W,X,Y,Z
5'-R(*UP*CP*GP*CP*CP*CP*AP*UP*CP*AP*CP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures