Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 229
95 % 17 115 321
90 % 17 115 339
70 % 18 120 356
50 % 18 132 368
40 % 18 132 393
30 % 18 132 397
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 142 175
95 % 19 142 236
90 % 19 142 250
70 % 20 159 250
50 % 20 167 246
40 % 20 167 264
30 % 20 167 270
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 117 224
95 % 17 117 315
90 % 17 117 333
70 % 17 117 369
50 % 18 122 416
40 % 18 124 434
30 % 18 124 435
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 138 183
95 % 18 138 244
90 % 18 138 259
70 % 18 138 289
50 % 19 143 313
40 % 19 143 328
30 % 19 143 336
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28414
95 % 1 3 23590
90 % 1 3 22823
70 % 1 3 20815
50 % 1 3 18035
40 % 1 3 16073
30 % 1 3 13740
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 116 226
95 % 17 117 313
90 % 17 117 329
70 % 18 124 339
50 % 18 134 357
40 % 18 142 324
30 % 18 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 112 232
95 % 16 112 326
90 % 16 112 345
70 % 16 112 378
50 % 16 114 439
40 % 16 114 470
30 % 16 114 471
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 61 563
95 % 8 61 781
90 % 8 61 809
70 % 8 62 833
50 % 9 69 753
40 % 9 69 785
30 % 9 69 780
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 143 172
95 % 20 143 233
90 % 20 143 248
70 % 21 148 271
50 % 21 150 291
40 % 21 160 284
30 % 21 160 293
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 137 185
95 % 18 137 247
90 % 18 137 262
70 % 18 137 294
50 % 19 155 279
40 % 19 155 298
30 % 19 155 307
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 64 522
95 % 9 64 715
90 % 9 64 745
70 % 9 64 796
50 % 11 82 567
40 % 11 82 605
30 % 11 82 595
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64315
95 % 19 143 234
90 % 19 143 249
70 % 19 143 280
50 % 20 148 296
40 % 20 148 311
30 % 20 161 292
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 116 228
95 % 17 116 320
90 % 17 116 338
70 % 18 121 355
50 % 18 123 406
40 % 18 123 436
30 % 18 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TWF 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
2 3S14 7 I DNA-directed RNA polymerase II subunit RPB9 4932
3 3CQZ 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
4 3PO2 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
5 3RZO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
6 3PO3 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
7 3S1M 7 I DNA-directed RNA polymerase II subunit RPB9 4932
8 4A3E 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
9 3S1R 7 I DNA-directed RNA polymerase II subunit RPB9 4932
10 4A3D 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
11 3S1N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
12 5IP7 9 I DNA-directed RNA polymerase II subunit RPB9 4932
13 4A3F 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
14 4A93 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
15 1K83 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
16 1I50 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
17 4BY7 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
18 3S2D 7 I DNA-directed RNA polymerase II subunit RPB9 4932
19 4A3C 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
20 4A3K 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
21 3S15 7 I DNA-directed RNA polymerase II subunit RPB9 4932
22 4A3L 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
23 4BXX 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
24 3S1Q 7 I DNA-directed RNA polymerase II subunit RPB9 4932
25 3S16 7 I DNA-directed RNA polymerase II subunit RPB9 4932
26 3S17 7 I DNA-directed RNA polymerase II subunit RPB9 4932
27 4A3G 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
28 4A3B 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
29 4BBR 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
30 2NVQ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
31 3RZD 7 I DNA-directed RNA polymerase II subunit RPB9 4932
32 4A3J 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
33 3S2H 7 I DNA-directed RNA polymerase II subunit RPB9 4932
34 3M3Y 7 I DNA-directed RNA polymerase II subunit RPB9 4932
35 4A3I 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
36 4BY1 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
37 4A3M 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
38 4Y7N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
39 5IP9 9 I DNA-directed RNA polymerase II subunit RPB9 4932
40 1I3Q 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
41 4BBS 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
42 1TWC 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
43 4Y52 7 I DNA-directed RNA polymerase II subunit RPB9 4932
44 3HOU 9 I, U DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
45 3HOY 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
46 3HOV 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
47 1TWA 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
48 5C3E 9 I DNA-directed RNA polymerase II subunit RPB9 4932
49 2NVT 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
50 3HOZ 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
51 3HOW 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
52 3HOX 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
53 1I6H 9 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
54 2R92 11 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
55 2R7Z 12 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
56 1R9T 10 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
57 3I4M 9 I DNA-directed RNA polymerase II subunit RPB9 4932
58 3H3V 9 J DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
59 5U5Q 9 I DNA-directed RNA polymerase II subunit RPB9 4932
60 1TWH 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
61 2NVY 7 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
62 2E2J 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
63 5C4X 9 I DNA-directed RNA polymerase II subunit RPB9 4932
64 2VUM 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
65 5C44 9 I DNA-directed RNA polymerase II subunit RPB9 4932
66 3M4O 7 I DNA-directed RNA polymerase II subunit RPB9 4932
67 5C4J 7 I DNA-directed RNA polymerase II subunit RPB9 4932
68 2R93 10 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
69 1TWG 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
70 3GTM 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
71 3I4N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
72 2E2I 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
73 3GTL 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
74 4BXZ 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
75 3GTK 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
76 5C4A 9 I DNA-directed RNA polymerase II subunit RPB9 4932
77 3K1F 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
78 3GTJ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
79 3GTG 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
80 2YU9 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
81 1WCM 9 I DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
82 2JA7 12 I, U DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
83 4X6A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
84 4X67 7 I DNA-directed RNA polymerase II subunit RPB9 4932
85 1Y1W 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
86 3K7A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
87 2JA8 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
88 2JA5 9 I DNA-directed RNA polymerase II subunit RPB9 4932
89 2NVX 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
90 2B63 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
91 3GTQ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
92 3GTP 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
93 1Y1V 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
94 3GTO 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
95 3FKI 9 I DNA-directed RNA polymerase II subunit RPB9 4932
96 1Y1Y 11 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
97 1SFO 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
98 2E2H 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
99 2JA6 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
100 2NVZ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
101 1Y77 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
102 1NIK 9 I DNA-directed RNA polymerase II, chain RPB9 4932 2.7.7.6 | Details
103 1R9S 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
104 1R5U 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
105 2B8K 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
106 5SVA 9 I DNA-directed RNA polymerase II subunit RPB9 4932
107 5FYW 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
108 5FZ5 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
109 5FMF 11 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
110 4V1M 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
111 4V1N 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
112 4V1O 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
113 3J1N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
114 3J0K 9 I DNA-directed RNA polymerase II subunit 9 9606 2.7.7.6 | Details
115 1PQV 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
116 1NT9 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details