Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 123 229
95 % 18 123 319 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 1.6
PDBFlex
90 % 18 123 333
70 % 19 128 356
50 % 19 141 380
40 % 19 141 401
30 % 19 141 401
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 158 173
95 % 20 158 234 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 20 158 246
70 % 21 176 229
50 % 21 184 231
40 % 21 184 250
30 % 21 184 260
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 125 224
95 % 18 125 313 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 18 125 326
70 % 18 125 374
50 % 19 130 421
40 % 19 132 428
30 % 19 132 429
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 154 177
95 % 19 154 239 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 19 154 251
70 % 19 154 283
50 % 20 159 293
40 % 20 159 315
30 % 20 159 322
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 29814
95 % 1 3 24709 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 3 23872
70 % 1 3 21720
50 % 1 3 18772
40 % 1 3 16711
30 % 1 3 14290
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 124 225
95 % 18 125 312 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.3
PDBFlex
90 % 18 125 324
70 % 19 132 337
50 % 19 143 372
40 % 19 151 340
30 % 19 162 306
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 120 237
95 % 17 120 325 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 17 120 341
70 % 17 120 383
50 % 17 122 442
40 % 17 122 468
30 % 17 122 461
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 64 565
95 % 9 64 761 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.7
PDBFlex
90 % 9 64 790
70 % 9 65 829
50 % 10 72 750
40 % 10 72 786
30 % 10 72 781
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 159 170
95 % 21 159 232 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 21 159 244
70 % 22 164 255
50 % 22 166 273
40 % 22 177 267
30 % 22 177 277
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 153 179
95 % 19 153 243 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 19 153 255
70 % 19 153 288
50 % 20 172 263
40 % 20 172 274
30 % 20 172 286
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 67 506
95 % 10 67 694 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.7
PDBFlex
90 % 10 67 724
70 % 10 67 772
50 % 12 86 568
40 % 12 86 603
30 % 12 86 598
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67290
95 % 20 159 233 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 20 159 245
70 % 20 159 274
50 % 21 164 281
40 % 21 164 297
30 % 21 178 276
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 124 228
95 % 18 124 317 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 18 124 331
70 % 19 129 354
50 % 19 131 413
40 % 19 131 432
30 % 19 142 400

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TWF 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
2 3S14 7 I DNA-directed RNA polymerase II subunit RPB9 4932
3 3CQZ 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
4 3PO2 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
5 3RZO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
6 3PO3 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
7 5XOG 9 I DNA-directed RNA polymerase subunit 460519
8 3S1M 7 I DNA-directed RNA polymerase II subunit RPB9 4932
9 4A3E 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
10 5OT2 9 I DNA-directed RNA polymerase II subunit RPB9 4932
11 3S1R 7 I DNA-directed RNA polymerase II subunit RPB9 4932
12 4A3D 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
13 3S1N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
14 5IP7 9 I DNA-directed RNA polymerase II subunit RPB9 4932
15 4A3F 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
16 4A93 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
17 1K83 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 1I50 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 4BY7 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
20 3S2D 7 I DNA-directed RNA polymerase II subunit RPB9 4932
21 4A3C 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
22 4A3K 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
23 3S15 7 I DNA-directed RNA polymerase II subunit RPB9 4932
24 4A3L 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
25 4BXX 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
26 3S1Q 7 I DNA-directed RNA polymerase II subunit RPB9 4932
27 3S16 7 I DNA-directed RNA polymerase II subunit RPB9 4932
28 3S17 7 I DNA-directed RNA polymerase II subunit RPB9 4932
29 4A3G 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
30 4A3B 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
31 4BBR 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
32 2NVQ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
33 3RZD 7 I DNA-directed RNA polymerase II subunit RPB9 4932
34 4A3J 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
35 3S2H 7 I DNA-directed RNA polymerase II subunit RPB9 4932
36 3M3Y 7 I DNA-directed RNA polymerase II subunit RPB9 4932
37 4A3I 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
38 6BM4 7 I DNA-directed RNA polymerase II subunit RPB9 4932
39 4BY1 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
40 4A3M 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
41 6BLP 7 I DNA-directed RNA polymerase II subunit RPB9 4932
42 4Y7N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
43 5IP9 9 I DNA-directed RNA polymerase II subunit RPB9 4932
44 1I3Q 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
45 4BBS 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
46 6BLO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
47 1TWC 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
48 4Y52 7 I DNA-directed RNA polymerase II subunit RPB9 4932
49 6BQF 7 I DNA-directed RNA polymerase II subunit RPB9 4932
50 3HOU 9 I, U DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
51 3HOY 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
52 3HOV 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
53 6BM2 7 I DNA-directed RNA polymerase II subunit RPB9 4932
54 1TWA 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
55 5C3E 9 I DNA-directed RNA polymerase II subunit RPB9 4932
56 2NVT 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
57 3HOZ 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
58 3HOW 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
59 3HOX 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
60 1I6H 9 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
61 2R92 11 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
62 2R7Z 12 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
63 1R9T 10 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
64 3I4M 9 I DNA-directed RNA polymerase II subunit RPB9 4932
65 3H3V 9 J DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
66 5U5Q 9 I DNA-directed RNA polymerase II subunit RPB9 4932
67 1TWH 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
68 2NVY 7 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
69 2E2J 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
70 5C4X 9 I DNA-directed RNA polymerase II subunit RPB9 4932
71 2VUM 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
72 5C44 9 I DNA-directed RNA polymerase II subunit RPB9 4932
73 3M4O 7 I DNA-directed RNA polymerase II subunit RPB9 4932
74 5C4J 7 I DNA-directed RNA polymerase II subunit RPB9 4932
75 2R93 10 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
76 1TWG 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
77 3GTM 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
78 3I4N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
79 2E2I 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
80 3GTL 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
81 4BXZ 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
82 3GTK 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
83 5C4A 9 I DNA-directed RNA polymerase II subunit RPB9 4932
84 3K1F 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
85 3GTJ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
86 3GTG 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
87 2YU9 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
88 1WCM 9 I DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
89 2JA7 12 I, U DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
90 4X6A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
91 4X67 7 I DNA-directed RNA polymerase II subunit RPB9 4932
92 1Y1W 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
93 3K7A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
94 5X50 9 I DNA-directed RNA polymerase subunit 460519
95 2JA8 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
96 2JA5 9 I DNA-directed RNA polymerase II subunit RPB9 4932
97 2NVX 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
98 2B63 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
99 3GTQ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
100 3GTP 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
101 1Y1V 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
102 3GTO 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
103 3H0G 9 I, U DNA-directed RNA polymerase II subunit RPB9 4896
104 3FKI 9 I DNA-directed RNA polymerase II subunit RPB9 4932
105 1Y1Y 11 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
106 1SFO 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
107 2E2H 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
108 2JA6 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
109 2NVZ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
110 1Y77 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
111 1NIK 9 I DNA-directed RNA polymerase II, chain RPB9 4932 2.7.7.6 | Details
112 1R9S 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
113 1R5U 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
114 2B8K 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
115 5X51 9 I, U DNA-directed RNA polymerase subunit 460519
116 5X4Z 9 I, U DNA-directed RNA polymerase subunit 460519
117 5XON 9 I DNA-directed RNA polymerase subunit 460519
118 5VVS 9 I DNA-directed RNA polymerase II subunit RPB9 4932
119 5VVR 9 I DNA-directed RNA polymerase II subunit RPB9 4932
120 5U0S 25 i RNA polymerase II subunit Rpb9 4896
121 5SVA 9 I DNA-directed RNA polymerase II subunit RPB9 4932
122 5FYW 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
123 5FZ5 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
124 5FMF 11 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
125 4V1M 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
126 4V1N 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
127 4V1O 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
128 3J1N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
129 3J0K 9 I DNA-directed RNA polymerase II subunit 9 9606 2.7.7.6 | Details
130 1PQV 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
131 1NT9 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details