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elongating RNA Polymerase II-Bye1 TLD complex
Sequence Clustering and Redundancy Reduction Results
4BY7
Cluster # 269 Members. Sequence cutoff: 90% Cluster size: 110 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4C2M 11 H, W DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
2 1TWF 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
3 3S14 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
4 3CQZ 6 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932  
5 3PO2 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
6 3RZO 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
7 3PO3 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
8 3S1M 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
9 4A3E 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
10 4C3I 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
11 3S1R 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
12 4A3D 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
13 3S1N 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
14 4A3F 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
15 4A93 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
16 1K83 6 H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE 4932   2.7.7.6   
17 1I50 6 H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE 4932   2.7.7.6   
18 4BY7 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
19 3S2D 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
20 4A3C 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
21 4A3K 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
22 3S15 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
23 4A3L 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932  
24 4BXX 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
25 3S1Q 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
26 3S16 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
27 3S17 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
28 4A3G 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
29 4A3B 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
30 4BBR 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
31 2NVQ 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
32 3RZD 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
33 4A3J 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
34 3S2H 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
35 3M3Y 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
36 4A3I 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
37 4BY1 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
38 4A3M 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932  
39 4Y7N 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
40 1I3Q 6 H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE 4932   2.7.7.6   
41 4BBS 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
42 4C3J 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932   2.7.7.6   
43 4C3H 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
44 1TWC 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
45 4Y52 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
46 3HOU 8 H, T DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
47 3HOY 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
48 3HOV 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
49 1TWA 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
50 2NVT 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
51 3HOZ 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
52 3HOW 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
53 3HOX 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
54 1I6H 8 H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE 4932   2.7.7.6   
55 2R92 10 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
56 2R7Z 11 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
57 1R9T 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
58 3I4M 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
59 3H3V 8 I DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
60 1TWH 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
61 2NVY 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
62 2E2J 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
63 2VUM 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932   2.7.7.6   
64 3M4O 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
65 2R93 9 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
66 1TWG 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
67 3GTM 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932  
68 3I4N 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
69 2E2I 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
70 3GTL 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932  
71 4BXZ 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932   2.7.7.6   
72 3GTK 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932  
73 3K1F 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
74 3GTJ 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932  
75 3GTG 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932  
76 2YU9 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
77 1WCM 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932   2.7.7.6   
78 2JA7 11 H, T DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932   2.7.7.6   
79 4X6A 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
80 4X67 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 559292  
81 1Y1W 11 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
82 3QT1 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932   2.7.7.6   
83 3K7A 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
84 2JA8 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932   2.7.7.6   
85 2JA5 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932   2.7.7.6   
86 2NVX 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
87 2B63 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
88 3GTQ 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932  
89 3GTP 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932  
90 1Y1V 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
91 3GTO 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932  
92 3FKI 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932  
93 1Y1Y 10 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
94 1SFO 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
95 2E2H 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
96 2JA6 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932   2.7.7.6   
97 2NVZ 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
98 1Y77 11 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
99 1NIK 8 H DNA-directed RNA polymerase subunit RPB8 4932   2.7.7.6   
100 1R9S 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
101 1R5U 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
102 2B8K 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
103 4V1M 6 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
104 4V1N 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
105 4V1O 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932  
106 3J1N 8 H DNA-directed RNA polymerase II subunit RPABC3 4932  
107 3J0K 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 9606   2.7.7.6   
108 1PQV 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932   2.7.7.6   
109 1NT9 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE 4932   2.7.7.6   
110 1A1D 1 A RNA POLYMERASE SUBUNIT RPB8 4932   2.7.7.6   
 
Sequence Clusters for the Sequence Entities in PDB 4BY7
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 204
95% 16 103 287
90% 16 103 301
70% 16 103 323
50% 16 104 347
40% 16 104 377
30% 16 104 380
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 109 189
95% 18 109 263
90% 18 109 276
70% 18 110 289
50% 18 118 273
40% 18 118 310
30% 18 118 319
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 105 200
95% 16 105 285
90% 16 105 296
70% 16 105 318
50% 16 105 350
40% 16 106 367
30% 16 106 372
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 108 191
95% 18 108 266
90% 18 108 280
70% 18 108 300
50% 18 108 328
40% 18 108 361
30% 18 108 363
Entity #13: Chains: N - , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22993
95% 1 3 19210
90% 1 3 18630
70% 1 3 17148
50% 1 3 15001
40% 1 3 13444
30% 1 3 11533
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 104 201
95% 16 105 283
90% 16 105 295
70% 16 105 317
50% 16 106 334
40% 16 114 320
30% 16 114 329
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 205
95% 16 103 288
90% 16 103 302
70% 16 103 324
50% 16 104 349
40% 16 104 379
30% 16 104 384
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 51 459
95% 7 51 666
90% 7 51 699
70% 7 52 747
50% 7 52 838
40% 7 52 859
30% 7 52 860
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 110 184
95% 19 110 256
90% 19 110 268
70% 19 110 292
50% 19 111 310
40% 19 111 344
30% 19 111 352
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 107 192
95% 18 107 272
90% 18 107 285
70% 18 107 305
50% 18 109 317
40% 18 109 349
30% 18 109 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 53 433
95% 8 53 632
90% 8 53 663
70% 8 53 714
50% 9 55 712
40% 9 55 740
30% 9 55 740
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53203
95% 18 110 257
90% 18 110 269
70% 18 110 293
50% 18 110 318
40% 18 110 350
30% 18 112 349
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 104 203
95% 16 104 286
90% 16 104 300
70% 16 104 322
50% 16 105 343
40% 16 105 374
30% 16 105 377
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.