Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 113 206
95 % 17 113 291
90 % 17 113 305
70 % 17 113 329
50 % 17 123 328
40 % 17 123 355
30 % 17 123 363
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 124 176
95 % 19 124 242
90 % 19 124 251
70 % 19 134 256
50 % 19 142 252
40 % 19 142 273
30 % 19 142 290
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 203
95 % 17 115 289
90 % 17 115 302
70 % 17 115 326
50 % 17 115 357
40 % 17 116 380
30 % 17 116 383
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 120 183
95 % 18 120 253
90 % 18 120 261
70 % 18 120 298
50 % 18 120 327
40 % 18 120 353
30 % 18 120 360
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25819
95 % 1 3 21435
90 % 1 3 20751
70 % 1 3 19031
50 % 1 3 16564
40 % 1 3 14790
30 % 1 3 12650
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 204
95 % 17 115 286
90 % 17 115 298
70 % 17 115 322
50 % 17 125 323
40 % 17 133 309
30 % 17 136 313
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 209
95 % 16 110 301
90 % 16 110 316
70 % 16 110 337
50 % 16 111 364
40 % 16 111 397
30 % 16 111 398
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 59 454
95 % 8 59 668
90 % 8 59 713
70 % 8 60 734
50 % 8 62 767
40 % 8 62 803
30 % 8 62 802
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 125 171
95 % 20 125 236
90 % 20 125 246
70 % 20 125 277
50 % 20 126 309
40 % 20 135 303
30 % 20 135 321
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 119 188
95 % 18 119 254
90 % 18 119 262
70 % 18 119 299
50 % 18 130 295
40 % 18 130 318
30 % 18 130 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 62 405
95 % 9 62 596
90 % 9 62 629
70 % 9 62 672
50 % 10 73 583
40 % 10 73 616
30 % 10 73 628
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59056
95 % 19 125 237
90 % 19 125 247
70 % 19 125 279
50 % 19 125 317
40 % 19 125 338
30 % 19 136 316
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 205
95 % 17 114 290
90 % 17 114 304
70 % 17 114 328
50 % 17 115 351
40 % 17 115 384
30 % 17 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4C2M 11 H, W DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
2 1TWF 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
3 3S14 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
4 3CQZ 6 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932
5 3PO2 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
6 3RZO 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
7 3PO3 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
8 3S1M 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
9 4A3E 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
10 4C3I 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
11 3S1R 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
12 4A3D 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
13 3S1N 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
14 5IP7 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
15 4A3F 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
16 4A93 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
17 1K83 6 H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 1I50 6 H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 4BY7 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
20 3S2D 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
21 4A3C 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
22 4A3K 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
23 3S15 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
24 4A3L 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932
25 4BXX 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
26 3S1Q 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
27 3S16 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
28 3S17 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
29 4A3G 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
30 4A3B 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
31 4BBR 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
32 2NVQ 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
33 3RZD 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
34 4A3J 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
35 3S2H 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
36 3M3Y 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
37 4A3I 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
38 4BY1 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
39 4A3M 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932
40 4Y7N 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
41 5IP9 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
42 1I3Q 6 H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE 4932 2.7.7.6 | Details
43 4BBS 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
44 4C3J 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932 2.7.7.6 | Details
45 4C3H 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
46 1TWC 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
47 4Y52 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
48 3HOU 8 H, T DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
49 3HOY 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
50 3HOV 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
51 1TWA 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
52 5C3E 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
53 2NVT 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
54 3HOZ 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
55 3HOW 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
56 3HOX 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
57 1I6H 8 H DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE 4932 2.7.7.6 | Details
58 2R92 10 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
59 2R7Z 11 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
60 1R9T 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
61 3I4M 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
62 3H3V 8 I DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
63 1TWH 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
64 2NVY 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
65 2E2J 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
66 5C4X 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
67 2VUM 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932 2.7.7.6 | Details
68 5C44 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
69 3M4O 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
70 5C4J 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
71 2R93 9 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
72 1TWG 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
73 3GTM 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932
74 3I4N 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
75 2E2I 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
76 3GTL 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932
77 4BXZ 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 4932 2.7.7.6 | Details
78 3GTK 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932
79 5C4A 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
80 3K1F 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
81 3GTJ 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932
82 3GTG 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932
83 2YU9 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
84 1WCM 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
85 2JA7 11 H, T DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
86 4X6A 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
87 4X67 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
88 1Y1W 11 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
89 3QT1 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932 2.7.7.6 | Details
90 3K7A 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
91 2JA8 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
92 2JA5 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
93 2NVX 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
94 2B63 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
95 3GTQ 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932
96 3GTP 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932
97 4YM7 8 AH, BH, CH, DH, EH, FH DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
98 1Y1V 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
99 3GTO 6 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932
100 3FKI 8 H DNA-directed RNA polymerases I, II, and III subunit RPABC3 4932
101 1Y1Y 10 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
102 1SFO 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
103 2E2H 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
104 2JA6 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
105 2NVZ 9 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
106 1Y77 11 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
107 1NIK 8 H DNA-directed RNA polymerase subunit RPB8 4932 2.7.7.6 | Details
108 1R9S 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
109 1R5U 6 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
110 2B8K 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
111 5G5L 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
112 5FYW 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
113 5FZ5 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
114 5FMF 10 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3, RPB8 4932
115 5FJ8 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
116 5FJ9 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
117 5FJA 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
118 4V1M 6 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
119 4V1N 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
120 4V1O 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 4932
121 3J1N 8 H DNA-directed RNA polymerase II subunit RPABC3 4932
122 3J0K 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 9606 2.7.7.6 | Details
123 1PQV 8 H DNA-directed RNA polymerases I, II, and III 14.5 kDa polypeptide 4932 2.7.7.6 | Details
124 1NT9 8 H DNA-DIRECTED RNA POLYMERASES I, II, AND III 14.5 KD POLYPEPTIDE 4932 2.7.7.6 | Details
125 1A1D 1 A RNA POLYMERASE SUBUNIT RPB8 4932 2.7.7.6 | Details