Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 113 203
95 % 17 113 285
90 % 17 113 299
70 % 17 113 321
50 % 17 123 314
40 % 17 123 342
30 % 17 123 351
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 123 159
95 % 19 123 222
90 % 19 123 234
70 % 19 133 214
50 % 19 141 241
40 % 19 141 267
30 % 19 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 199
95 % 17 115 280
90 % 17 115 293
70 % 17 115 318
50 % 17 115 343
40 % 17 116 361
30 % 17 116 372
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 119 164
95 % 18 119 234
90 % 18 119 244
70 % 18 119 278
50 % 18 119 313
40 % 18 119 341
30 % 18 119 350
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25029
95 % 1 3 20839
90 % 1 3 20186
70 % 1 3 18507
50 % 1 3 16132
40 % 1 3 14428
30 % 1 3 12353
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 200
95 % 17 115 277
90 % 17 115 290
70 % 17 115 316
50 % 17 125 308
40 % 17 133 292
30 % 17 136 300
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 207
95 % 16 110 294
90 % 16 110 308
70 % 16 110 329
50 % 16 111 346
40 % 16 111 379
30 % 16 111 384
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 59 412
95 % 8 59 610
90 % 8 59 647
70 % 8 60 678
50 % 8 62 745
40 % 8 62 773
30 % 8 62 781
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 124 152
95 % 20 124 212
90 % 20 124 224
70 % 20 124 257
50 % 20 125 293
40 % 20 134 291
30 % 20 134 311
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 118 166
95 % 18 118 239
90 % 18 118 250
70 % 18 118 282
50 % 18 129 278
40 % 18 129 305
30 % 18 129 326
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 62 381
95 % 9 62 561
90 % 9 62 591
70 % 9 62 638
50 % 10 73 550
40 % 10 73 585
30 % 10 73 592
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57398
95 % 19 124 216
90 % 19 124 227
70 % 19 124 261
50 % 19 124 304
40 % 19 124 326
30 % 19 135 306
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 202
95 % 17 114 284
90 % 17 114 298
70 % 17 114 320
50 % 17 115 339
40 % 17 115 365
30 % 17 118 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4C2M 10 F, U DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
2 1TWF 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
3 3S14 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
4 3CQZ 5 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932 4.2.1.99 | Details
5 3PO2 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
6 3RZO 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
7 3PO3 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
8 3S1M 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
9 4A3E 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
10 4C3I 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
11 3S1R 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
12 4A3D 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
13 3S1N 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
14 4A3F 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
15 4A93 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
16 1K83 5 F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE 4932 4.2.1.99 | Details
17 1I50 5 F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE 4932 4.2.1.99 | Details
18 4BY7 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
19 3S2D 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
20 4A3C 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
21 4A3K 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
22 3S15 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
23 4A3L 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932 4.2.1.99 | Details
24 4BXX 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
25 3S1Q 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
26 3S16 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
27 3S17 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
28 4A3G 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
29 4A3B 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
30 4BBR 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
31 2NVQ 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
32 3RZD 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
33 4A3J 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
34 3S2H 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
35 3M3Y 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
36 4A3I 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
37 4BY1 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
38 4A3M 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932 4.2.1.99 | Details
39 4Y7N 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
40 1I3Q 5 F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE 4932 4.2.1.99 | Details
41 4BBS 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
42 4C3J 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932 4.2.1.99 | Details
43 4C3H 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
44 1TWC 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
45 4Y52 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
46 3HOU 6 F, R DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
47 3HOY 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
48 3HOV 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
49 1TWA 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
50 5C3E 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
51 2NVT 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
52 3HOZ 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
53 3HOW 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
54 3HOX 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
55 1I6H 7 F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE 4932 4.2.1.99 | Details
56 2R92 8 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
57 2R7Z 9 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
58 1R9T 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
59 3I4M 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
60 3H3V 6 G DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
61 1TWH 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
62 2NVY 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
63 2E2J 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
64 5C4X 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
65 2VUM 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932 4.2.1.99 | Details
66 5C44 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
67 3M4O 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
68 5C4J 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
69 2R93 7 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
70 1TWG 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
71 3GTM 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
72 3I4N 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
73 2E2I 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
74 3GTL 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
75 4BXZ 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932 4.2.1.99 | Details
76 3GTK 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
77 5C4A 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
78 3K1F 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
79 3GTJ 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
80 3GTG 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
81 2YU9 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
82 1WCM 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932 4.2.1.99 | Details
83 2JA7 9 F, R DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932 4.2.1.99 | Details
84 4X6A 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
85 4X67 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
86 1Y1W 9 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
87 3QT1 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
88 3K7A 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
89 2JA8 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932 4.2.1.99 | Details
90 2JA5 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932 4.2.1.99 | Details
91 2NVX 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
92 2B63 7 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
93 3GTQ 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
94 3GTP 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
95 4YM7 6 AF, BF, CF, DF, EF, FF DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
96 1Y1V 6 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
97 3GTO 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
98 3FKI 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932 4.2.1.99 | Details
99 1Y1Y 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
100 1SFO 7 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
101 2E2H 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
102 2JA6 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932 4.2.1.99 | Details
103 2NVZ 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
104 1Y77 9 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
105 1NIK 6 F DNA-directed RNA polymerase I, II and III 23 kDa polypeptide 4932 4.2.1.99 | Details
106 1R9S 7 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
107 1R5U 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
108 2B8K 6 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
109 5FYW 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
110 5FZ5 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
111 5FJ8 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932 4.2.1.99 | Details
112 5FJ9 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
113 5FJA 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
114 4V1M 5 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
115 4V1N 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
116 4V1O 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932 4.2.1.99 | Details
117 1PQV 6 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details
118 1NT9 6 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932 4.2.1.99 | Details