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elongating RNA Polymerase II-Bye1 TLD complex
Sequence Clustering and Redundancy Reduction Results
4BY7
Cluster # 341 Members. Sequence cutoff: 40% Cluster size: 114 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4C2M 10 F, U DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
2 1TWF 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
3 3S14 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
4 3CQZ 5 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932  
5 3PO2 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
6 3RZO 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
7 3PO3 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
8 3S1M 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
9 4A3E 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
10 4C3I 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
11 3S1R 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
12 4A3D 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
13 3S1N 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
14 4A3F 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
15 4A93 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
16 1K83 5 F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE 4932   2.7.7.6   
17 1I50 5 F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE 4932   2.7.7.6   
18 4BY7 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
19 3S2D 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
20 4A3C 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
21 4A3K 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
22 3S15 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
23 4A3L 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932  
24 4BXX 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
25 3S1Q 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
26 3S16 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
27 3S17 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
28 4A3G 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
29 4A3B 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
30 4BBR 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
31 2NVQ 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
32 3RZD 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
33 4A3J 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
34 3S2H 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
35 3M3Y 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
36 4A3I 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
37 4BY1 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
38 4A3M 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932  
39 4Y7N 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
40 1I3Q 5 F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE 4932   2.7.7.6   
41 4BBS 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
42 4C3J 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932   2.7.7.6   
43 4C3H 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
44 1TWC 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
45 4Y52 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
46 3HOU 6 F, R DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
47 3HOY 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
48 3HOV 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
49 1TWA 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
50 5C3E 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
51 2NVT 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
52 3HOZ 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
53 3HOW 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
54 3HOX 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
55 1I6H 7 F DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE 4932   2.7.7.6   
56 2R92 8 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
57 2R7Z 9 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
58 1R9T 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
59 3I4M 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
60 3H3V 6 G DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
61 1TWH 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
62 2NVY 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
63 2E2J 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
64 5C4X 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
65 2VUM 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932   2.7.7.6   
66 5C44 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
67 3M4O 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
68 5C4J 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
69 2R93 7 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
70 1TWG 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
71 3GTM 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932  
72 3I4N 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
73 2E2I 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
74 3GTL 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932  
75 4BXZ 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 4932   2.7.7.6   
76 3GTK 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932  
77 5C4A 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
78 3K1F 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
79 3GTJ 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932  
80 3GTG 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932  
81 2YU9 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
82 1WCM 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932   2.7.7.6   
83 2JA7 9 F, R DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932   2.7.7.6   
84 4X6A 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
85 4X67 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 559292  
86 1Y1W 9 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
87 3QT1 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932   2.7.7.6   
88 3K7A 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
89 2JA8 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932   2.7.7.6   
90 2JA5 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932   2.7.7.6   
91 2NVX 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
92 2B63 7 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
93 3GTQ 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932  
94 3GTP 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932  
95 1Y1V 6 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
96 3GTO 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932  
97 3H0G 6 F, R DNA-directed RNA polymerases I, II, and III subunit RPABC2 284812  
98 3FKI 6 F DNA-directed RNA polymerases I, II, and III subunit RPABC2 4932  
99 1Y1Y 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
100 1SFO 7 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
101 2E2H 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
102 2JA6 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III 23 KDA POLYPEPTIDE 4932   2.7.7.6   
103 2NVZ 8 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
104 1Y77 9 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
105 1NIK 6 F DNA-directed RNA polymerase I, II and III 23 kDa polypeptide 4932   2.7.7.6   
106 1R9S 7 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
107 1R5U 5 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
108 2B8K 6 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
109 4V1M 5 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
110 4V1N 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
111 4V1O 6 F DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 4932  
112 1PQV 6 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
113 1NT9 6 F DNA-directed RNA polymerases I, II, and III 23 kDa polypeptide 4932   2.7.7.6   
114 1QKL 1 A DNA-DIRECTED RNA POLYMERASE II 14.4 KD POLYPEPTIDE 9606   2.7.7.6   
 
Sequence Clusters for the Sequence Entities in PDB 4BY7
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 198
95% 16 108 274
90% 16 108 288
70% 16 108 310
50% 16 109 330
40% 16 109 360
30% 16 109 366
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 114 184
95% 18 114 252
90% 18 114 262
70% 18 115 273
50% 18 123 270
40% 18 123 296
30% 18 123 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 194
95% 16 110 271
90% 16 110 284
70% 16 110 305
50% 16 110 334
40% 16 111 354
30% 16 111 363
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 113 187
95% 18 113 254
90% 18 113 265
70% 18 113 291
50% 18 113 318
40% 18 113 350
30% 18 113 357
Entity #13: Chains: N - , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23321
95% 1 3 19480
90% 1 3 18875
70% 1 3 17352
50% 1 3 15170
40% 1 3 13591
30% 1 3 11664
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 195
95% 16 110 267
90% 16 110 280
70% 16 110 302
50% 16 111 321
40% 16 119 308
30% 16 119 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 200
95% 16 108 277
90% 16 108 291
70% 16 108 311
50% 16 109 331
40% 16 109 364
30% 16 109 368
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 55 428
95% 7 55 617
90% 7 55 648
70% 7 56 689
50% 7 56 778
40% 7 56 805
30% 7 56 804
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 115 171
95% 19 115 240
90% 19 115 250
70% 19 115 279
50% 19 116 305
40% 19 116 335
30% 19 116 342
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 112 188
95% 18 112 256
90% 18 112 268
70% 18 112 294
50% 18 114 313
40% 18 114 341
30% 18 114 351
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 57 400
95% 8 57 589
90% 8 57 617
70% 8 57 668
50% 9 59 672
40% 9 59 703
30% 9 59 704
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53778
95% 18 115 242
90% 18 115 252
70% 18 115 282
50% 18 115 314
40% 18 115 342
30% 18 117 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 196
95% 16 109 273
90% 16 109 287
70% 16 109 309
50% 16 110 329
40% 16 110 359
30% 16 110 365
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.