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elongating RNA Polymerase II-Bye1 TLD complex
Sequence Clustering and Redundancy Reduction Results
4BY7
Cluster # 256 Members. Sequence cutoff: 95% Cluster size: 110 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1DZF 1 A DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 559292   2.7.7.6   
2 4C2M 9 E, T DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
3 1TWF 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
4 3S14 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
5 3CQZ 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
6 3PO2 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
7 3RZO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
8 3PO3 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
9 3S1M 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
10 4A3E 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
11 4C3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
12 3S1R 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
13 4A3D 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
14 3S1N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
15 4A3F 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
16 4A93 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
17 1K83 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
18 1I50 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
19 4BY7 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
20 3S2D 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
21 4A3C 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
22 4A3K 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
23 3S15 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
24 4A3L 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
25 4BXX 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
26 3S1Q 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
27 3S16 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
28 3S17 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
29 4A3G 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
30 4A3B 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
31 4BBR 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
32 2NVQ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
33 3RZD 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
34 4A3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
35 3S2H 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
36 3M3Y 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
37 4A3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
38 4BY1 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
39 4A3M 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
40 4Y7N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
41 1I3Q 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
42 4BBS 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
43 4C3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
44 4C3H 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
45 1TWC 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
46 4Y52 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
47 3HOU 5 E, Q DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
48 3HOY 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
49 3HOV 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
50 1TWA 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
51 2NVT 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
52 3HOZ 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
53 3HOW 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
54 3HOX 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
55 1I6H 6 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
56 2R92 7 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
57 2R7Z 8 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
58 1R9T 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
59 3I4M 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
60 3H3V 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
61 1TWH 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
62 2NVY 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
63 2E2J 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
64 2VUM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
65 3M4O 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
66 2R93 6 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
67 1TWG 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
68 3GTM 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
69 3I4N 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
70 2E2I 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
71 3GTL 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
72 4BXZ 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
73 3GTK 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
74 3K1F 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
75 3GTJ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
76 3GTG 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
77 2YU9 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
78 1WCM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
79 2JA7 8 E, Q DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
80 4X6A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
81 4X67 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
82 1Y1W 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
83 3QT1 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
84 3K7A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
85 2JA8 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
86 2JA5 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
87 2NVX 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
88 2B63 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
89 3GTQ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
90 3GTP 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
91 1Y1V 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
92 3GTO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
93 3FKI 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
94 1Y1Y 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
95 1SFO 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
96 2E2H 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
97 2JA6 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
98 2NVZ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
99 1Y77 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
100 1NIK 5 E DNA-directed RNA polymerase II, chain RPB5 4932   2.7.7.6   
101 1R9S 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
102 1R5U 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
103 2B8K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
104 4V1M 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
105 4V1N 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
106 4V1O 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
107 3J1N 5 E DNA-directed RNA polymerase II subunit RPABC1 4932  
108 3J0K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 9606   2.7.7.6   
109 1PQV 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
110 1NT9 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
 
Sequence Clusters for the Sequence Entities in PDB 4BY7
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 205
95% 16 103 288
90% 16 103 301
70% 16 103 323
50% 16 104 347
40% 16 104 378
30% 16 104 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 109 189
95% 18 109 263
90% 18 109 276
70% 18 110 290
50% 18 118 274
40% 18 118 310
30% 18 118 320
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 105 201
95% 16 105 286
90% 16 105 296
70% 16 105 319
50% 16 105 350
40% 16 106 368
30% 16 106 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 108 191
95% 18 108 266
90% 18 108 280
70% 18 108 300
50% 18 108 328
40% 18 108 362
30% 18 108 365
Entity #13: Chains: N - , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23041
95% 1 3 19256
90% 1 3 18671
70% 1 3 17183
50% 1 3 15034
40% 1 3 13475
30% 1 3 11564
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 104 202
95% 16 105 284
90% 16 105 295
70% 16 105 318
50% 16 106 334
40% 16 114 320
30% 16 114 329
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 206
95% 16 103 289
90% 16 103 302
70% 16 103 324
50% 16 104 349
40% 16 104 380
30% 16 104 384
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 51 464
95% 7 51 673
90% 7 51 708
70% 7 52 753
50% 7 52 843
40% 7 52 864
30% 7 52 864
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 110 184
95% 19 110 256
90% 19 110 268
70% 19 110 292
50% 19 111 310
40% 19 111 344
30% 19 111 353
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 107 192
95% 18 107 272
90% 18 107 285
70% 18 107 305
50% 18 109 317
40% 18 109 349
30% 18 109 358
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 53 437
95% 8 53 638
90% 8 53 670
70% 8 53 721
50% 9 55 712
40% 9 55 740
30% 9 55 741
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53292
95% 18 110 257
90% 18 110 269
70% 18 110 293
50% 18 110 318
40% 18 110 350
30% 18 112 350
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 104 204
95% 16 104 287
90% 16 104 300
70% 16 104 322
50% 16 105 343
40% 16 105 375
30% 16 105 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.