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elongating RNA Polymerase II-Bye1 TLD complex
Sequence Clustering and Redundancy Reduction Results
4BY7
Cluster # 254 Members. Sequence cutoff: 95% Cluster size: 103 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1DZF 1 A DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 559292   2.7.7.6   
2 4C2M 9 E, T DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
3 1TWF 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
4 3S14 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
5 3CQZ 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
6 3PO2 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
7 3RZO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
8 3PO3 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
9 3S1M 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
10 4A3E 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
11 4C3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
12 3S1R 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
13 4A3D 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
14 3S1N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
15 4A3F 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 559292  
16 4A93 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
17 1K83 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
18 1I50 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
19 4BY7 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
20 3S2D 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
21 4A3C 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
22 4A3K 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 559292  
23 3S15 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
24 4A3L 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
25 4BXX 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
26 3S1Q 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
27 3S16 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
28 3S17 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
29 4A3G 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
30 4A3B 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
31 4BBR 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
32 2NVQ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
33 3RZD 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
34 4A3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
35 3S2H 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
36 3M3Y 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
37 4A3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
38 4BY1 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
39 4A3M 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
40 1I3Q 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
41 4BBS 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
42 4C3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
43 4C3H 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
44 1TWC 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
45 3HOU 5 E, Q DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
46 3HOY 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
47 3HOV 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
48 1TWA 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
49 2NVT 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
50 3HOZ 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
51 3HOW 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
52 3HOX 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
53 1I6H 6 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
54 2R92 7 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
55 2R7Z 8 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
56 1R9T 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
57 3I4M 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
58 3H3V 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
59 1TWH 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
60 2NVY 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
61 2E2J 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
62 2VUM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
63 3M4O 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
64 2R93 6 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
65 1TWG 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
66 3GTM 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
67 3I4N 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
68 2E2I 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
69 3GTL 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
70 4BXZ 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
71 3GTK 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
72 3K1F 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
73 3GTJ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
74 3GTG 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
75 2YU9 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
76 1WCM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
77 2JA7 8 E, Q DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
78 1Y1W 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
79 3QT1 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
80 3K7A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
81 2JA8 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
82 2JA5 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
83 2NVX 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
84 2B63 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
85 3GTQ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
86 3GTP 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
87 1Y1V 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
88 3GTO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
89 3FKI 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
90 1Y1Y 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
91 1SFO 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
92 2E2H 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
93 2JA6 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
94 2NVZ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
95 1Y77 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
96 1NIK 5 E DNA-directed RNA polymerase II, chain RPB5 4932   2.7.7.6   
97 1R9S 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
98 1R5U 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
99 2B8K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
100 3J1N 5 E DNA-directed RNA polymerase II subunit RPABC1 4932  
101 3J0K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 9606   2.7.7.6   
102 1PQV 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
103 1NT9 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
 
Sequence Clusters for the Sequence Entities in PDB 4BY7
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 96 203
95% 16 96 288
90% 16 96 303
70% 16 96 321
50% 16 97 345
40% 16 97 366
30% 16 97 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 102 186
95% 18 102 265
90% 18 102 277
70% 18 103 286
50% 18 112 272
40% 18 112 301
30% 18 112 317
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 98 200
95% 16 98 284
90% 16 98 299
70% 16 98 315
50% 16 98 354
40% 16 99 362
30% 16 99 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 101 188
95% 18 101 270
90% 18 101 282
70% 18 101 300
50% 18 101 335
40% 18 101 357
30% 18 101 370
Entity #13: Chains: N - , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 21484
95% 1 3 18021
90% 1 3 17493
70% 1 3 16121
50% 1 3 14141
40% 1 3 12689
30% 1 3 10915
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 97 201
95% 16 98 281
90% 16 98 296
70% 16 98 313
50% 16 99 339
40% 16 108 308
30% 16 108 326
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 96 205
95% 16 96 289
90% 16 96 304
70% 16 96 322
50% 16 97 348
40% 16 97 368
30% 16 97 383
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 49 447
95% 7 49 646
90% 7 49 679
70% 7 50 712
50% 7 50 789
40% 7 50 807
30% 7 50 809
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 103 180
95% 19 103 254
90% 19 103 266
70% 19 103 291
50% 19 104 309
40% 19 104 336
30% 19 104 348
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 100 190
95% 18 100 274
90% 18 100 286
70% 18 100 306
50% 18 102 325
40% 18 102 347
30% 18 102 360
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 51 417
95% 8 51 608
90% 8 51 639
70% 8 51 678
50% 9 53 648
40% 9 53 678
30% 9 53 679
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 49853
95% 18 103 255
90% 18 103 268
70% 18 103 292
50% 18 103 326
40% 18 103 348
30% 18 105 344
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 97 202
95% 16 97 287
90% 16 97 302
70% 16 97 319
50% 16 98 343
40% 16 98 364
30% 16 98 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.