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elongating RNA Polymerase II-Bye1 TLD complex
Sequence Clustering and Redundancy Reduction Results
4BY7
Cluster # 239 Members. Sequence cutoff: 95% Cluster size: 115 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 1DZF 1 A DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 559292   2.7.7.6   
2 4C2M 9 E, T DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
3 1TWF 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
4 3S14 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
5 3CQZ 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
6 3PO2 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
7 3RZO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
8 3PO3 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
9 3S1M 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
10 4A3E 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
11 4C3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
12 3S1R 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
13 4A3D 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
14 3S1N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
15 4A3F 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
16 4A93 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
17 1K83 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
18 1I50 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
19 4BY7 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
20 3S2D 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
21 4A3C 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
22 4A3K 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
23 3S15 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
24 4A3L 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
25 4BXX 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
26 3S1Q 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
27 3S16 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
28 3S17 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
29 4A3G 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
30 4A3B 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
31 4BBR 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
32 2NVQ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
33 3RZD 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
34 4A3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
35 3S2H 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
36 3M3Y 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
37 4A3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
38 4BY1 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
39 4A3M 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932  
40 4Y7N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
41 1I3Q 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
42 4BBS 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
43 4C3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
44 4C3H 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
45 1TWC 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
46 4Y52 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
47 3HOU 5 E, Q DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
48 3HOY 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
49 3HOV 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
50 1TWA 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
51 5C3E 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
52 2NVT 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
53 3HOZ 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
54 3HOW 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
55 3HOX 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
56 1I6H 6 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932   2.7.7.6   
57 2R92 7 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
58 2R7Z 8 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
59 1R9T 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
60 3I4M 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
61 3H3V 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
62 1TWH 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
63 2NVY 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
64 2E2J 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
65 5C4X 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
66 2VUM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
67 5C44 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
68 3M4O 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
69 5C4J 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
70 2R93 6 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
71 1TWG 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
72 3GTM 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
73 3I4N 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
74 2E2I 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
75 3GTL 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
76 4BXZ 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932   2.7.7.6   
77 3GTK 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
78 5C4A 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
79 3K1F 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
80 3GTJ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
81 3GTG 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
82 2YU9 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
83 1WCM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
84 2JA7 8 E, Q DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
85 4X6A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
86 4X67 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 559292  
87 1Y1W 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
88 3QT1 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932   2.7.7.6   
89 3K7A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
90 2JA8 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
91 2JA5 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
92 2NVX 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
93 2B63 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
94 3GTQ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
95 3GTP 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
96 1Y1V 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
97 3GTO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932  
98 3FKI 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932  
99 1Y1Y 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
100 1SFO 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
101 2E2H 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
102 2JA6 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932   2.7.7.6   
103 2NVZ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
104 1Y77 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
105 1NIK 5 E DNA-directed RNA polymerase II, chain RPB5 4932   2.7.7.6   
106 1R9S 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
107 1R5U 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
108 2B8K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
109 4V1M 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
110 4V1N 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
111 4V1O 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932  
112 3J1N 5 E DNA-directed RNA polymerase II subunit RPABC1 4932  
113 3J0K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 9606   2.7.7.6   
114 1PQV 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
115 1NT9 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932   2.7.7.6   
 
Sequence Clusters for the Sequence Entities in PDB 4BY7
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 198
95% 16 108 273
90% 16 108 287
70% 16 108 308
50% 16 109 329
40% 16 109 359
30% 16 109 365
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 114 183
95% 18 114 251
90% 18 114 261
70% 18 115 272
50% 18 123 270
40% 18 123 296
30% 18 123 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 110 194
95% 16 110 270
90% 16 110 283
70% 16 110 304
50% 16 110 333
40% 16 111 353
30% 16 111 362
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 113 187
95% 18 113 253
90% 18 113 264
70% 18 113 290
50% 18 113 317
40% 18 113 349
30% 18 113 356
Entity #13: Chains: N - , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23272
95% 1 3 19441
90% 1 3 18839
70% 1 3 17318
50% 1 3 15145
40% 1 3 13571
30% 1 3 11646
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 195
95% 16 110 265
90% 16 110 278
70% 16 110 301
50% 16 111 320
40% 16 119 308
30% 16 119 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 108 200
95% 16 108 277
90% 16 108 291
70% 16 108 310
50% 16 109 330
40% 16 109 363
30% 16 109 367
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 55 430
95% 7 55 619
90% 7 55 651
70% 7 56 689
50% 7 56 776
40% 7 56 803
30% 7 56 804
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 115 170
95% 19 115 239
90% 19 115 249
70% 19 115 277
50% 19 116 305
40% 19 116 335
30% 19 116 342
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 112 188
95% 18 112 255
90% 18 112 267
70% 18 112 293
50% 18 114 312
40% 18 114 340
30% 18 114 350
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 57 402
95% 8 57 589
90% 8 57 619
70% 8 57 670
50% 9 59 672
40% 9 59 703
30% 9 59 703
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53678
95% 18 115 241
90% 18 115 251
70% 18 115 280
50% 18 115 313
40% 18 115 341
30% 18 117 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 109 196
95% 16 109 272
90% 16 109 286
70% 16 109 307
50% 16 110 328
40% 16 110 358
30% 16 110 364
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.