Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 113 203
95 % 17 113 285
90 % 17 113 298
70 % 17 113 320
50 % 17 123 313
40 % 17 123 340
30 % 17 123 349
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 123 159
95 % 19 123 220
90 % 19 123 233
70 % 19 133 214
50 % 19 141 241
40 % 19 141 267
30 % 19 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 199
95 % 17 115 279
90 % 17 115 292
70 % 17 115 316
50 % 17 115 341
40 % 17 116 359
30 % 17 116 370
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 119 164
95 % 18 119 233
90 % 18 119 243
70 % 18 119 278
50 % 18 119 312
40 % 18 119 339
30 % 18 119 348
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24984
95 % 1 3 20806
90 % 1 3 20156
70 % 1 3 18482
50 % 1 3 16111
40 % 1 3 14406
30 % 1 3 12340
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 200
95 % 17 115 277
90 % 17 115 290
70 % 17 115 315
50 % 17 125 307
40 % 17 133 292
30 % 17 136 300
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 207
95 % 16 110 294
90 % 16 110 307
70 % 16 110 328
50 % 16 111 344
40 % 16 111 378
30 % 16 111 384
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 59 410
95 % 8 59 609
90 % 8 59 646
70 % 8 60 676
50 % 8 62 742
40 % 8 62 772
30 % 8 62 779
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 124 152
95 % 20 124 210
90 % 20 124 222
70 % 20 124 255
50 % 20 125 292
40 % 20 134 291
30 % 20 134 311
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 118 166
95 % 18 118 239
90 % 18 118 250
70 % 18 118 282
50 % 18 129 277
40 % 18 129 304
30 % 18 129 324
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 62 381
95 % 9 62 560
90 % 9 62 590
70 % 9 62 637
50 % 10 73 548
40 % 10 73 584
30 % 10 73 591
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57277
95 % 19 124 214
90 % 19 124 225
70 % 19 124 259
50 % 19 124 303
40 % 19 124 325
30 % 19 135 306
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 202
95 % 17 114 284
90 % 17 114 297
70 % 17 114 319
50 % 17 115 337
40 % 17 115 364
30 % 17 118 365

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DZF 1 A DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932 2.7.7.6 | Details
2 4C2M 9 E, T DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
3 1TWF 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
4 3S14 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
5 3CQZ 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932
6 3PO2 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
7 3RZO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
8 3PO3 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
9 3S1M 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
10 4A3E 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
11 4C3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
12 3S1R 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
13 4A3D 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
14 3S1N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
15 5IP7 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
16 4A3F 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
17 4A93 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
18 1K83 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 1I50 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932 2.7.7.6 | Details
20 4BY7 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
21 3S2D 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
22 4A3C 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
23 4A3K 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
24 3S15 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
25 4A3L 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932
26 4BXX 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
27 3S1Q 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
28 3S16 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
29 3S17 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
30 4A3G 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
31 4A3B 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
32 4BBR 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
33 2NVQ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
34 3RZD 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
35 4A3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
36 3S2H 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
37 3M3Y 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
38 4A3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
39 4BY1 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
40 4A3M 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932
41 4Y7N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
42 5IP9 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
43 1I3Q 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932 2.7.7.6 | Details
44 4BBS 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
45 4C3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932 2.7.7.6 | Details
46 4C3H 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
47 1TWC 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
48 4Y52 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
49 3HOU 5 E, Q DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
50 3HOY 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
51 3HOV 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
52 1TWA 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
53 5C3E 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
54 2NVT 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
55 3HOZ 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
56 3HOW 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
57 3HOX 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
58 1I6H 6 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932 2.7.7.6 | Details
59 2R92 7 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
60 2R7Z 8 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
61 1R9T 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
62 3I4M 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
63 3H3V 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
64 1TWH 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
65 2NVY 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
66 2E2J 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
67 5C4X 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
68 2VUM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932 2.7.7.6 | Details
69 5C44 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
70 3M4O 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
71 5C4J 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
72 2R93 6 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
73 1TWG 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
74 3GTM 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
75 3I4N 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
76 2E2I 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
77 3GTL 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
78 4BXZ 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932 2.7.7.6 | Details
79 3GTK 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
80 5C4A 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
81 3K1F 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
82 3GTJ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
83 3GTG 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
84 2YU9 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
85 1WCM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
86 2JA7 8 E, Q DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
87 4X6A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
88 4X67 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
89 1Y1W 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
90 3QT1 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
91 3K7A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
92 2JA8 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
93 2JA5 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
94 2NVX 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
95 2B63 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
96 3GTQ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
97 3GTP 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
98 4YM7 5 AE, BE, CE, DE, EE, FE DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
99 1Y1V 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
100 3GTO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
101 3H0G 5 E, Q DNA-directed RNA polymerases I, II, and III subunit RPABC1 4896
102 3FKI 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
103 1Y1Y 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
104 1SFO 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
105 2E2H 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
106 2JA6 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
107 2NVZ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
108 1Y77 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
109 1NIK 5 E DNA-directed RNA polymerase II, chain RPB5 4932 2.7.7.6 | Details
110 1R9S 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
111 1R5U 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
112 2B8K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
113 5FYW 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
114 5FZ5 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
115 5FMF 7 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 4932
116 5FJ8 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
117 5FJ9 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
118 5FJA 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
119 4V1M 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
120 4V1N 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
121 4V1O 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
122 3J1N 5 E DNA-directed RNA polymerase II subunit RPABC1 4932
123 3J0K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 9606 2.7.7.6 | Details
124 1PQV 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
125 1NT9 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details