Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 109 204
95 % 16 109 285
90 % 16 109 298
70 % 16 109 321
50 % 16 111 331
40 % 16 111 363
30 % 16 111 372
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 119 161
95 % 18 119 223
90 % 18 119 234
70 % 18 121 256
50 % 18 129 257
40 % 18 129 277
30 % 18 129 295
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 111 198
95 % 16 111 281
90 % 16 111 294
70 % 16 111 317
50 % 16 111 341
40 % 16 112 362
30 % 16 112 370
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 117 165
95 % 18 117 233
90 % 18 117 243
70 % 18 117 272
50 % 18 117 308
40 % 18 117 335
30 % 18 117 345
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24288
95 % 1 3 20258
90 % 1 3 19620
70 % 1 3 17993
50 % 1 3 15693
40 % 1 3 14036
30 % 1 3 12027
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 200
95 % 16 111 279
90 % 16 111 292
70 % 16 111 314
50 % 16 113 328
40 % 16 121 314
30 % 16 124 320
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 108 207
95 % 16 108 289
90 % 16 108 302
70 % 16 108 323
50 % 16 109 342
40 % 16 109 373
30 % 16 109 378
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 55 452
95 % 7 55 647
90 % 7 55 682
70 % 7 56 723
50 % 7 58 779
40 % 7 58 803
30 % 7 58 797
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 120 158
95 % 19 120 218
90 % 19 120 229
70 % 19 120 262
50 % 19 121 293
40 % 19 122 313
30 % 19 122 327
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 116 167
95 % 18 116 236
90 % 18 116 245
70 % 18 116 275
50 % 18 119 298
40 % 18 119 325
30 % 18 119 334
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 58 396
95 % 8 58 588
90 % 8 58 621
70 % 8 58 668
50 % 9 61 679
40 % 9 61 713
30 % 9 61 714
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55800
95 % 18 120 220
90 % 18 120 231
70 % 18 120 264
50 % 18 120 299
40 % 18 120 326
30 % 18 123 324
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 203
95 % 16 110 284
90 % 16 110 297
70 % 16 110 320
50 % 16 111 333
40 % 16 111 365
30 % 16 114 365

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DZF 1 A DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932 2.7.7.6 | Details
2 4C2M 9 E, T DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
3 1TWF 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
4 3S14 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
5 3CQZ 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932
6 3PO2 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
7 3RZO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
8 3PO3 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
9 3S1M 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
10 4A3E 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
11 4C3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
12 3S1R 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
13 4A3D 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
14 3S1N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
15 4A3F 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
16 4A93 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
17 1K83 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 1I50 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 4BY7 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
20 3S2D 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
21 4A3C 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
22 4A3K 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
23 3S15 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
24 4A3L 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932
25 4BXX 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
26 3S1Q 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
27 3S16 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
28 3S17 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
29 4A3G 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
30 4A3B 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
31 4BBR 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
32 2NVQ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
33 3RZD 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
34 4A3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
35 3S2H 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
36 3M3Y 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
37 4A3I 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
38 4BY1 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
39 4A3M 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932
40 4Y7N 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
41 1I3Q 4 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932 2.7.7.6 | Details
42 4BBS 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
43 4C3J 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932 2.7.7.6 | Details
44 4C3H 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
45 1TWC 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
46 4Y52 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
47 3HOU 5 E, Q DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
48 3HOY 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
49 3HOV 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
50 1TWA 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
51 5C3E 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
52 2NVT 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
53 3HOZ 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
54 3HOW 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
55 3HOX 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
56 1I6H 6 E DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE 4932 2.7.7.6 | Details
57 2R92 7 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
58 2R7Z 8 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
59 1R9T 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
60 3I4M 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
61 3H3V 5 F DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
62 1TWH 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
63 2NVY 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
64 2E2J 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
65 5C4X 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
66 2VUM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932 2.7.7.6 | Details
67 5C44 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
68 3M4O 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
69 5C4J 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
70 2R93 6 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
71 1TWG 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
72 3GTM 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
73 3I4N 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
74 2E2I 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
75 3GTL 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
76 4BXZ 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 4932 2.7.7.6 | Details
77 3GTK 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
78 5C4A 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
79 3K1F 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
80 3GTJ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
81 3GTG 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
82 2YU9 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
83 1WCM 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
84 2JA7 8 E, Q DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
85 4X6A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
86 4X67 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
87 1Y1W 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
88 3QT1 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932 2.7.7.6 | Details
89 3K7A 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
90 2JA8 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
91 2JA5 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
92 2NVX 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
93 2B63 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
94 3GTQ 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
95 3GTP 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
96 4YM7 5 AE, BE, CE, DE, EE, FE DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
97 1Y1V 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
98 3GTO 4 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932
99 3H0G 5 E, Q DNA-directed RNA polymerases I, II, and III subunit RPABC1 4896
100 3FKI 5 E DNA-directed RNA polymerases I, II, and III subunit RPABC1 4932
101 1Y1Y 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
102 1SFO 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
103 2E2H 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
104 2JA6 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III 27 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
105 2NVZ 7 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
106 1Y77 8 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
107 1NIK 5 E DNA-directed RNA polymerase II, chain RPB5 4932 2.7.7.6 | Details
108 1R9S 6 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
109 1R5U 4 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
110 2B8K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
111 5FMF 7 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1, RPB5 4932
112 5FJ8 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
113 5FJ9 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
114 5FJA 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
115 4V1M 4 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
116 4V1N 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
117 4V1O 5 E DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 4932
118 3J1N 5 E DNA-directed RNA polymerase II subunit RPABC1 4932
119 3J0K 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 9606 2.7.7.6 | Details
120 1PQV 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details
121 1NT9 5 E DNA-directed RNA polymerases I, II, and III 27 kDa polypeptide 4932 2.7.7.6 | Details