Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 211
95 % 17 114 299
90 % 17 114 313
70 % 17 114 344
50 % 17 124 346
40 % 17 124 378
30 % 17 124 380
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 131 172
95 % 19 131 236
90 % 19 131 246
70 % 19 141 263
50 % 19 149 257
40 % 19 149 279
30 % 19 149 288
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 116 207
95 % 17 116 294
90 % 17 116 307
70 % 17 116 338
50 % 17 116 397
40 % 17 117 419
30 % 17 117 420
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 127 178
95 % 18 127 246
90 % 18 127 254
70 % 18 127 285
50 % 18 127 321
40 % 18 127 346
30 % 18 127 354
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 26632
95 % 1 3 22098
90 % 1 3 21393
70 % 1 3 19616
50 % 1 3 17058
40 % 1 3 15213
30 % 1 3 13003
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 208
95 % 17 116 288
90 % 17 116 300
70 % 17 116 334
50 % 17 126 336
40 % 17 134 322
30 % 17 137 327
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 111 213
95 % 16 111 307
90 % 16 111 322
70 % 16 111 358
50 % 16 112 411
40 % 16 112 447
30 % 16 112 441
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 60 507
95 % 8 60 712
90 % 8 60 742
70 % 8 61 775
50 % 8 63 789
40 % 8 63 816
30 % 8 63 817
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 132 169
95 % 20 132 231
90 % 20 132 242
70 % 20 132 277
50 % 20 133 303
40 % 20 142 302
30 % 20 142 313
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 126 179
95 % 18 126 248
90 % 18 126 256
70 % 18 126 288
50 % 18 137 298
40 % 18 137 316
30 % 18 137 330
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 63 467
95 % 9 63 657
90 % 9 63 685
70 % 9 63 732
50 % 10 74 596
40 % 10 74 630
30 % 10 74 635
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60677
95 % 19 132 234
90 % 19 132 245
70 % 19 132 278
50 % 19 132 308
40 % 19 132 332
30 % 19 143 311
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 209
95 % 17 115 298
90 % 17 115 311
70 % 17 115 343
50 % 17 116 394
40 % 17 116 427
30 % 17 119 415

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4C2M 1 1, L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
2 1TWF 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
3 3S14 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
4 3CQZ 10 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932
5 3PO2 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
6 3RZO 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
7 3PO3 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
8 3S1M 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
9 4A3E 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
10 4C3I 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
11 3S1R 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
12 4A3D 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
13 3S1N 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
14 4A3F 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
15 4A93 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
16 1K83 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932 2.7.7.6 | Details
17 1I50 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 4BY7 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
19 3S2D 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
20 4A3C 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
21 4A3K 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
22 3S15 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
23 4A3L 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932
24 4BXX 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
25 3S1Q 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
26 3S16 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
27 3S17 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
28 4A3G 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
29 4A3B 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
30 4BBR 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
31 2NVQ 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
32 3RZD 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
33 4A3J 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
34 3S2H 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
35 3M3Y 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
36 4A3I 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
37 4BY1 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
38 4A3M 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932
39 4Y7N 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
40 1I3Q 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932 2.7.7.6 | Details
41 4BBS 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
42 4C3J 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932 2.7.7.6 | Details
43 4C3H 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
44 1TWC 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
45 4Y52 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
46 3HOU 12 L, X DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
47 3HOY 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
48 3HOV 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
49 1TWA 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
50 5C3E 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
51 2NVT 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
52 3HOZ 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
53 3HOW 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
54 3HOX 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
55 1I6H 12 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932 2.7.7.6 | Details
56 2R92 14 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
57 2R7Z 15 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
58 1R9T 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
59 3I4M 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
60 3H3V 12 M DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
61 1TWH 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
62 2NVY 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
63 2E2J 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
64 5C4X 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
65 2VUM 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932
66 5C44 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
67 3M4O 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
68 5C4J 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
69 2R93 13 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
70 1TWG 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
71 3GTM 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
72 3I4N 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
73 2E2I 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
74 3GTL 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
75 4BXZ 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932 2.7.7.6 | Details
76 3GTK 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
77 5C4A 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
78 3K1F 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
79 3GTJ 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
80 3GTG 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
81 2YU9 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
82 1WCM 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
83 2JA7 15 L, X DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
84 4X6A 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
85 4X67 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
86 1Y1W 15 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
87 3QT1 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
88 3K7A 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
89 2JA8 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
90 2JA5 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
91 2NVX 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
92 2B63 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
93 3GTQ 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
94 3GTP 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
95 4YM7 12 AL, BL, CL, DL, EL, FL DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
96 1Y1V 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
97 3GTO 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
98 3FKI 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
99 1Y1Y 14 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
100 1SFO 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
101 2E2H 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
102 2JA6 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
103 2NVZ 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
104 1Y77 15 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
105 1NIK 12 L DNA-directed RNA polymerase II, chain RPB12 4932 2.7.7.6 | Details
106 1R9S 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
107 1R5U 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
108 2B8K 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
109 5M64 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
110 5M5W 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
111 5M5X 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
112 5M5Y 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
113 5M3M 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
114 5M3F 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
115 5SVA 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
116 5G5L 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
117 5FYW 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
118 5FZ5 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
119 5FJ8 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
120 5FJ9 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
121 5FJA 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
122 4V1M 10 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932 2.7.7.6 | Details
123 4V1N 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
124 4V1O 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
125 3J1N 12 L DNA-directed RNA polymerase II subunit RPABC4 4932
126 1PQV 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
127 1NT9 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details