Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 229
95 % 17 115 321
90 % 17 115 339
70 % 18 120 356
50 % 18 132 368
40 % 18 132 393
30 % 18 132 397
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 142 175
95 % 19 142 236
90 % 19 142 250
70 % 20 159 250
50 % 20 167 246
40 % 20 167 264
30 % 20 167 270
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 117 224
95 % 17 117 315
90 % 17 117 333
70 % 17 117 369
50 % 18 122 416
40 % 18 124 434
30 % 18 124 435
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 138 183
95 % 18 138 244
90 % 18 138 259
70 % 18 138 289
50 % 19 143 313
40 % 19 143 328
30 % 19 143 336
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28414
95 % 1 3 23590
90 % 1 3 22823
70 % 1 3 20815
50 % 1 3 18035
40 % 1 3 16073
30 % 1 3 13740
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 116 226
95 % 17 117 313
90 % 17 117 329
70 % 18 124 339
50 % 18 134 357
40 % 18 142 324
30 % 18 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 112 232
95 % 16 112 326
90 % 16 112 345
70 % 16 112 378
50 % 16 114 439
40 % 16 114 470
30 % 16 114 471
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 61 563
95 % 8 61 781
90 % 8 61 809
70 % 8 62 833
50 % 9 69 753
40 % 9 69 785
30 % 9 69 780
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 143 172
95 % 20 143 233
90 % 20 143 248
70 % 21 148 271
50 % 21 150 291
40 % 21 160 284
30 % 21 160 293
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 137 185
95 % 18 137 247
90 % 18 137 262
70 % 18 137 294
50 % 19 155 279
40 % 19 155 298
30 % 19 155 307
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 64 522
95 % 9 64 715
90 % 9 64 745
70 % 9 64 796
50 % 11 82 567
40 % 11 82 605
30 % 11 82 595
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64315
95 % 19 143 234
90 % 19 143 249
70 % 19 143 280
50 % 20 148 296
40 % 20 148 311
30 % 20 161 292
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 116 228
95 % 17 116 320
90 % 17 116 338
70 % 18 121 355
50 % 18 123 406
40 % 18 123 436
30 % 18 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4C2M 1 1, L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
2 1TWF 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
3 3S14 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
4 3CQZ 10 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932
5 3PO2 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
6 3RZO 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
7 3PO3 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
8 3S1M 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
9 4A3E 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
10 4C3I 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
11 3S1R 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
12 4A3D 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
13 3S1N 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
14 4A3F 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
15 4A93 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
16 1K83 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932 2.7.7.6 | Details
17 1I50 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 4BY7 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
19 3S2D 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
20 4A3C 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
21 4A3K 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
22 3S15 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
23 4A3L 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932
24 4BXX 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
25 3S1Q 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
26 3S16 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
27 3S17 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
28 4A3G 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
29 4A3B 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
30 4BBR 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
31 2NVQ 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
32 3RZD 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
33 4A3J 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
34 3S2H 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
35 3M3Y 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
36 4A3I 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
37 4BY1 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
38 4A3M 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932
39 4Y7N 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
40 1I3Q 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932 2.7.7.6 | Details
41 4BBS 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
42 4C3J 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932 2.7.7.6 | Details
43 4C3H 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
44 1TWC 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
45 4Y52 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
46 3HOU 12 L, X DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
47 3HOY 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
48 3HOV 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
49 1TWA 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
50 5C3E 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
51 2NVT 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
52 3HOZ 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
53 3HOW 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
54 3HOX 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
55 1I6H 12 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932 2.7.7.6 | Details
56 2R92 14 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
57 2R7Z 15 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
58 1R9T 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
59 3I4M 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
60 3H3V 12 M DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
61 5U5Q 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
62 1TWH 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
63 2NVY 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
64 2E2J 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
65 5C4X 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
66 2VUM 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932
67 5C44 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
68 3M4O 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
69 5C4J 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
70 2R93 13 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
71 1TWG 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
72 3GTM 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
73 3I4N 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
74 2E2I 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
75 3GTL 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
76 4BXZ 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932 2.7.7.6 | Details
77 3GTK 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
78 5C4A 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
79 3K1F 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
80 3GTJ 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
81 3GTG 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
82 2YU9 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
83 1WCM 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
84 2JA7 15 L, X DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
85 4X6A 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
86 4X67 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
87 1Y1W 15 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
88 3QT1 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932 2.7.7.6 | Details
89 3K7A 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
90 2JA8 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
91 2JA5 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
92 2NVX 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
93 2B63 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
94 3GTQ 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
95 3GTP 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
96 4YM7 12 AL, BL, CL, DL, EL, FL DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
97 1Y1V 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
98 3GTO 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932
99 3FKI 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
100 1Y1Y 14 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
101 1SFO 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
102 2E2H 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
103 2JA6 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
104 2NVZ 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
105 1Y77 15 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
106 1NIK 12 L DNA-directed RNA polymerase II, chain RPB12 4932 2.7.7.6 | Details
107 1R9S 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
108 1R5U 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
109 2B8K 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
110 5OA1 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
111 5W5Y 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
112 5W64 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
113 5W65 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
114 5W66 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
115 5N5Y 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
116 5N5Z 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
117 5N60 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
118 5N61 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
119 5M64 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
120 5M5W 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
121 5M5X 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
122 5M5Y 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
123 5M3M 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
124 5M3F 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
125 5SVA 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
126 5LMX 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932
127 5G5L 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
128 5FYW 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
129 5FZ5 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
130 5FJ8 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
131 5FJ9 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
132 5FJA 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
133 4V1M 10 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932 2.7.7.6 | Details
134 4V1N 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
135 4V1O 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932
136 3J1N 12 L DNA-directed RNA polymerase II subunit RPABC4 4932
137 1PQV 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details
138 1NT9 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932 2.7.7.6 | Details