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elongating RNA Polymerase II-Bye1 TLD complex
Sequence Clustering and Redundancy Reduction Results
4BY7
Cluster # 358 Members. Sequence cutoff: 40% Cluster size: 106 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4C2M 1 1, L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
2 1TWF 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
3 3S14 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 559292  
4 3CQZ 10 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932  
5 3PO2 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
6 3RZO 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 559292  
7 3PO3 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
8 3S1M 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
9 4A3E 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
10 4C3I 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
11 3S1R 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
12 4A3D 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
13 3S1N 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
14 4A3F 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
15 4A93 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
16 1K83 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932   2.7.7.6   
17 1I50 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932   2.7.7.6   
18 4BY7 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
19 3S2D 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 559292  
20 4A3C 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
21 4A3K 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
22 3S15 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
23 4A3L 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932  
24 4BXX 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
25 3S1Q 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
26 3S16 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
27 3S17 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
28 4A3G 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
29 4A3B 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
30 4BBR 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
31 2NVQ 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
32 3RZD 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 559292  
33 4A3J 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
34 3S2H 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 559292  
35 3M3Y 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
36 4A3I 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
37 4BY1 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
38 4A3M 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932  
39 1I3Q 10 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932   2.7.7.6   
40 4BBS 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
41 4C3J 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932   2.7.7.6   
42 4C3H 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
43 1TWC 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
44 3HOU 12 L, X DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
45 3HOY 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
46 3HOV 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
47 1TWA 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
48 2NVT 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
49 3HOZ 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
50 3HOW 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
51 3HOX 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
52 1I6H 12 L DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE 4932   2.7.7.6   
53 2R92 14 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
54 2R7Z 15 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
55 1R9T 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
56 3I4M 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
57 3H3V 12 M DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
58 1TWH 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
59 2NVY 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
60 2E2J 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
61 2VUM 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932  
62 3M4O 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
63 2R93 13 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
64 1TWG 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
65 3GTM 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932  
66 3I4N 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
67 2E2I 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
68 3GTL 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932  
69 4BXZ 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 4932   2.7.7.6   
70 3GTK 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932  
71 3K1F 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
72 3GTJ 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932  
73 3GTG 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932  
74 2YU9 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
75 1WCM 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932   2.7.7.6   
76 2JA7 15 L, X DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932   2.7.7.6   
77 4X6A 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 559292  
78 4X67 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 559292  
79 1Y1W 15 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
80 3QT1 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932   2.7.7.6   
81 3K7A 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
82 2JA8 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932   2.7.7.6   
83 2JA5 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932   2.7.7.6   
84 2NVX 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
85 2B63 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
86 3GTQ 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932  
87 3GTP 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932  
88 1Y1V 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
89 3GTO 10 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932  
90 3FKI 12 L DNA-directed RNA polymerases I, II, and III subunit RPABC4 4932  
91 1Y1Y 14 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
92 1SFO 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
93 2E2H 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
94 2JA6 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III 7.7 KDA POLYPEPTIDE 4932   2.7.7.6   
95 2NVZ 13 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
96 1Y77 15 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
97 1NIK 12 L DNA-directed RNA polymerase II, chain RPB12 4932   2.7.7.6   
98 1R9S 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
99 1R5U 10 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
100 2B8K 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
101 4V1M 10 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932   2.7.7.6   
102 4V1N 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
103 4V1O 12 L DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 4932  
104 3J1N 12 L DNA-directed RNA polymerase II subunit RPABC4 4932  
105 1PQV 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
106 1NT9 12 L DNA-directed RNA polymerases I, II, and III 7.7 kDa polypeptide 4932   2.7.7.6   
 
Sequence Clusters for the Sequence Entities in PDB 4BY7
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 101 206
95% 16 101 290
90% 16 101 305
70% 16 101 324
50% 16 102 349
40% 16 102 376
30% 16 102 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 107 188
95% 18 107 266
90% 18 107 278
70% 18 108 289
50% 18 116 275
40% 18 116 305
30% 18 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 201
95% 16 103 286
90% 16 103 301
70% 16 103 318
50% 16 103 353
40% 16 104 370
30% 16 104 375
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 106 190
95% 18 106 268
90% 18 106 282
70% 18 106 300
50% 18 106 328
40% 18 106 358
30% 18 106 366
Entity #13: Chains: N - , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22606
95% 1 3 18891
90% 1 3 18325
70% 1 3 16893
50% 1 3 14793
40% 1 3 13261
30% 1 3 11384
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 203
95% 16 103 283
90% 16 103 297
70% 16 103 316
50% 16 104 340
40% 16 112 319
30% 16 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 101 207
95% 16 101 291
90% 16 101 306
70% 16 101 325
50% 16 102 351
40% 16 102 379
30% 16 102 385
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 51 452
95% 7 51 656
90% 7 51 689
70% 7 52 733
50% 7 52 822
40% 7 52 841
30% 7 52 847
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 108 186
95% 19 108 259
90% 19 108 272
70% 19 108 291
50% 19 109 309
40% 19 109 337
30% 19 109 349
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 105 194
95% 18 105 277
90% 18 105 289
70% 18 105 307
50% 18 107 320
40% 18 107 352
30% 18 107 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 53 427
95% 8 53 625
90% 8 53 655
70% 8 53 705
50% 9 55 701
40% 9 55 729
30% 9 55 730
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 52414
95% 18 108 260
90% 18 108 273
70% 18 108 292
50% 18 108 321
40% 18 108 353
30% 18 110 347
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 205
95% 16 102 289
90% 16 102 304
70% 16 102 323
50% 16 103 347
40% 16 103 374
30% 16 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.