Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 229
95 % 17 115 321
90 % 17 115 339
70 % 18 120 356
50 % 18 132 368
40 % 18 132 393
30 % 18 132 397
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 142 175
95 % 19 142 236
90 % 19 142 250
70 % 20 159 250
50 % 20 167 246
40 % 20 167 264
30 % 20 167 270
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 117 224
95 % 17 117 315
90 % 17 117 333
70 % 17 117 369
50 % 18 122 416
40 % 18 124 434
30 % 18 124 435
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 138 183
95 % 18 138 244
90 % 18 138 259
70 % 18 138 289
50 % 19 143 313
40 % 19 143 328
30 % 19 143 336
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 28414
95 % 1 3 23590
90 % 1 3 22823
70 % 1 3 20815
50 % 1 3 18035
40 % 1 3 16073
30 % 1 3 13740
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 116 226
95 % 17 117 313
90 % 17 117 329
70 % 18 124 339
50 % 18 134 357
40 % 18 142 324
30 % 18 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 112 232
95 % 16 112 326
90 % 16 112 345
70 % 16 112 378
50 % 16 114 439
40 % 16 114 470
30 % 16 114 471
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 61 563
95 % 8 61 781
90 % 8 61 809
70 % 8 62 833
50 % 9 69 753
40 % 9 69 785
30 % 9 69 780
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 143 172
95 % 20 143 233
90 % 20 143 248
70 % 21 148 271
50 % 21 150 291
40 % 21 160 284
30 % 21 160 293
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 137 185
95 % 18 137 247
90 % 18 137 262
70 % 18 137 294
50 % 19 155 279
40 % 19 155 298
30 % 19 155 307
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 64 522
95 % 9 64 715
90 % 9 64 745
70 % 9 64 796
50 % 11 82 567
40 % 11 82 605
30 % 11 82 595
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64315
95 % 19 143 234
90 % 19 143 249
70 % 19 143 280
50 % 20 148 296
40 % 20 148 311
30 % 20 161 292
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 116 228
95 % 17 116 320
90 % 17 116 338
70 % 18 121 355
50 % 18 123 406
40 % 18 123 436
30 % 18 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4C2M 13 J, Y DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
2 1TWF 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
3 3S14 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
4 3CQZ 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
5 3PO2 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
6 3RZO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
7 3PO3 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
8 3S1M 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
9 4A3E 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
10 4C3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
11 3S1R 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
12 4A3D 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
13 3S1N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
14 5IP7 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
15 4A3F 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
16 4A93 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
17 1K83 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 1I50 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 4BY7 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
20 3S2D 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
21 4A3C 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
22 4A3K 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
23 3S15 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
24 4A3L 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
25 4BXX 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
26 3S1Q 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
27 3S16 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
28 3S17 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
29 4A3G 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
30 4A3B 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
31 4BBR 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
32 2NVQ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
33 3RZD 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
34 4A3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
35 3S2H 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
36 3M3Y 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
37 4A3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
38 4BY1 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
39 4A3M 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
40 4Y7N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
41 5IP9 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
42 1I3Q 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
43 4BBS 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
44 4C3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
45 4C3H 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
46 1TWC 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
47 4Y52 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
48 3HOU 10 J, V DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
49 3HOY 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
50 3HOV 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
51 1TWA 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
52 5C3E 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
53 2NVT 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
54 3HOZ 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
55 3HOW 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
56 3HOX 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
57 1I6H 10 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
58 2R92 12 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
59 2R7Z 13 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
60 1R9T 11 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
61 3I4M 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
62 3H3V 10 K DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
63 5U5Q 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
64 1TWH 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
65 2NVY 8 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
66 2E2J 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
67 5C4X 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
68 2VUM 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
69 5C44 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
70 3M4O 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
71 5C4J 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
72 2R93 11 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
73 1TWG 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
74 3GTM 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
75 3I4N 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
76 2E2I 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
77 3GTL 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
78 4BXZ 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
79 3GTK 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
80 5C4A 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
81 3K1F 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
82 3GTJ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
83 3GTG 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
84 2YU9 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
85 1WCM 10 J DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
86 2JA7 13 J, V DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
87 4X6A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
88 4X67 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
89 1Y1W 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
90 3QT1 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
91 3K7A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
92 2JA8 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
93 2JA5 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
94 2NVX 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
95 2B63 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
96 3GTQ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
97 3GTP 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
98 4YM7 10 AJ, BJ, CJ, DJ, EJ, FJ DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
99 1Y1V 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
100 3GTO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
101 3FKI 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
102 1Y1Y 12 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
103 1SFO 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
104 2E2H 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
105 2JA6 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
106 2NVZ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
107 1Y77 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
108 1NIK 10 J DNA-directed RNA polymerase II, chain RPB10 4932 2.7.7.6 | Details
109 1R9S 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
110 1R5U 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
111 2B8K 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
112 5OA1 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
113 5W5Y 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
114 5W64 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
115 5W65 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
116 5W66 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
117 5N5Y 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
118 5N5Z 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
119 5N60 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
120 5N61 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
121 5M64 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
122 5M5W 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
123 5M5X 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
124 5M5Y 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
125 5M3M 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
126 5M3F 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
127 5SVA 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
128 5LMX 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
129 5G5L 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
130 5FYW 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
131 5FZ5 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
132 5FMF 12 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 4932
133 5FJ8 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
134 5FJ9 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
135 5FJA 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
136 4V1M 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
137 4V1N 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
138 4V1O 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
139 3J1N 10 J DNA-directed RNA polymerase II subunit RPABC5 4932
140 3J0K 10 J DNA-directed RNA polymerases I/II/III subunit 10 9606 2.7.7.6 | Details
141 1PQV 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
142 1NT9 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details