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elongating RNA Polymerase II-Bye1 TLD complex
Sequence Clustering and Redundancy Reduction Results
4BY7
Cluster # 274 Members. Sequence cutoff: 90% Cluster size: 107 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4C2M 13 J, Y DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
2 1TWF 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
3 3S14 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
4 3CQZ 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932  
5 3PO2 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
6 3RZO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
7 3PO3 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
8 3S1M 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
9 4A3E 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
10 4C3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
11 3S1R 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
12 4A3D 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
13 3S1N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
14 4A3F 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
15 4A93 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
16 1K83 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932   2.7.7.6   
17 1I50 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932   2.7.7.6   
18 4BY7 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
19 3S2D 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
20 4A3C 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
21 4A3K 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
22 3S15 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
23 4A3L 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932  
24 4BXX 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
25 3S1Q 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
26 3S16 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
27 3S17 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
28 4A3G 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
29 4A3B 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
30 4BBR 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
31 2NVQ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
32 3RZD 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
33 4A3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
34 3S2H 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
35 3M3Y 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
36 4A3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
37 4BY1 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
38 4A3M 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932  
39 1I3Q 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932   2.7.7.6   
40 4BBS 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
41 4C3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932   2.7.7.6   
42 4C3H 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
43 1TWC 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
44 3HOU 10 J, V DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
45 3HOY 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
46 3HOV 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
47 1TWA 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
48 2NVT 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
49 3HOZ 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
50 3HOW 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
51 3HOX 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
52 1I6H 10 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932   2.7.7.6   
53 2R92 12 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
54 2R7Z 13 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
55 1R9T 11 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
56 3I4M 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
57 3H3V 10 K DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
58 1TWH 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
59 2NVY 8 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
60 2E2J 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
61 2VUM 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932   2.7.7.6   
62 3M4O 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
63 2R93 11 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
64 1TWG 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
65 3GTM 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
66 3I4N 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
67 2E2I 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
68 3GTL 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
69 4BXZ 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932   2.7.7.6   
70 3GTK 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
71 3K1F 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
72 3GTJ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
73 3GTG 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
74 2YU9 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
75 1WCM 10 J DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE 4932   2.7.7.6   
76 2JA7 13 J, V DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932   2.7.7.6   
77 4X6A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
78 4X67 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
79 1Y1W 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
80 3QT1 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
81 3K7A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
82 2JA8 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932   2.7.7.6   
83 2JA5 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932   2.7.7.6   
84 2NVX 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
85 2B63 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
86 3GTQ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
87 3GTP 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
88 1Y1V 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
89 3GTO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
90 3FKI 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
91 1Y1Y 12 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
92 1SFO 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
93 2E2H 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
94 2JA6 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932   2.7.7.6   
95 2NVZ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
96 1Y77 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
97 1NIK 10 J DNA-directed RNA polymerase II, chain RPB10 4932   2.7.7.6   
98 1R9S 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
99 1R5U 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
100 2B8K 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
101 4V1M 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
102 4V1N 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
103 4V1O 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
104 3J1N 10 J DNA-directed RNA polymerase II subunit RPABC5 4932  
105 3J0K 10 J DNA-directed RNA polymerases I/II/III subunit 10 9606   2.7.7.6   
106 1PQV 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
107 1NT9 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
 
Sequence Clusters for the Sequence Entities in PDB 4BY7
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 101 204
95% 16 101 288
90% 16 101 302
70% 16 101 318
50% 16 102 348
40% 16 102 374
30% 16 102 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 107 186
95% 18 107 262
90% 18 107 274
70% 18 108 284
50% 18 116 274
40% 18 116 303
30% 18 116 320
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 200
95% 16 103 282
90% 16 103 296
70% 16 103 314
50% 16 103 353
40% 16 104 368
30% 16 104 375
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 106 189
95% 18 106 264
90% 18 106 278
70% 18 106 296
50% 18 106 328
40% 18 106 355
30% 18 106 364
Entity #13: Chains: N - , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 22359
95% 1 3 18684
90% 1 3 18117
70% 1 3 16690
50% 1 3 14617
40% 1 3 13109
30% 1 3 11253
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 201
95% 16 103 278
90% 16 103 291
70% 16 103 310
50% 16 104 340
40% 16 112 314
30% 16 112 326
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 101 205
95% 16 101 290
90% 16 101 304
70% 16 101 320
50% 16 102 350
40% 16 102 377
30% 16 102 385
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 51 447
95% 7 51 647
90% 7 51 679
70% 7 52 725
50% 7 52 814
40% 7 52 833
30% 7 52 838
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 108 183
95% 19 108 255
90% 19 108 267
70% 19 108 287
50% 19 109 306
40% 19 109 332
30% 19 109 347
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 105 193
95% 18 105 273
90% 18 105 285
70% 18 105 302
50% 18 107 318
40% 18 107 347
30% 18 107 354
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 53 423
95% 8 53 615
90% 8 53 644
70% 8 53 698
50% 9 55 686
40% 9 55 711
30% 9 55 712
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 51808
95% 18 108 256
90% 18 108 269
70% 18 108 288
50% 18 108 319
40% 18 108 348
30% 18 110 345
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 102 203
95% 16 102 287
90% 16 102 301
70% 16 102 317
50% 16 103 346
40% 16 103 372
30% 16 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.