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elongating RNA Polymerase II-Bye1 TLD complex
Sequence Clustering and Redundancy Reduction Results
4BY7
Cluster # 312 Members. Sequence cutoff: 40% Cluster size: 118 sequences
Rank   PDB id Entity id Chains Description Details Taxonomy EC Number
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1 4C2M 13 J, Y DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
2 1TWF 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
3 3S14 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
4 3CQZ 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932  
5 3PO2 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
6 3RZO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
7 3PO3 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
8 3S1M 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
9 4A3E 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
10 4C3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
11 3S1R 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
12 4A3D 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
13 3S1N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
14 4A3F 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
15 4A93 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
16 1K83 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932   2.7.7.6   
17 1I50 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932   2.7.7.6   
18 4BY7 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
19 3S2D 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
20 4A3C 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
21 4A3K 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
22 3S15 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
23 4A3L 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932  
24 4BXX 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
25 3S1Q 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
26 3S16 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
27 3S17 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
28 4A3G 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
29 4A3B 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
30 4BBR 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
31 2NVQ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
32 3RZD 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
33 4A3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
34 3S2H 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
35 3M3Y 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
36 4A3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
37 4BY1 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
38 4A3M 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932  
39 4Y7N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
40 1I3Q 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932   2.7.7.6   
41 4BBS 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
42 4C3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932   2.7.7.6   
43 4C3H 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
44 1TWC 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
45 4Y52 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
46 3HOU 10 J, V DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
47 3HOY 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
48 3HOV 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
49 1TWA 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
50 4AYB 11 N DNA-DIRECTED RNA POLYMERASE RPO10 2286   2.7.7.6   
51 2NVT 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
52 3HOZ 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
53 3HOW 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
54 3HOX 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
55 1I6H 10 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932   2.7.7.6   
56 2R92 12 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
57 2R7Z 13 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
58 1R9T 11 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
59 3I4M 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
60 3H3V 10 K DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
61 1TWH 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
62 2NVY 8 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
63 2E2J 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
64 2VUM 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932   2.7.7.6   
65 3M4O 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
66 2R93 11 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
67 1TWG 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
68 3GTM 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
69 3I4N 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
70 3HKZ 11 N, W DNA-directed RNA polymerase subunit N 273057   2.7.7.6   
71 2WAQ 11 N DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT 2286   2.7.7.6   
72 2E2I 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
73 3GTL 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
74 2PMZ 10 N, Y DNA-directed RNA polymerase subunit N 273057   2.7.7.6   
75 4BXZ 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932   2.7.7.6   
76 3GTK 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
77 3K1F 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
78 3GTJ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
79 3GTG 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
80 2YU9 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
81 4QIW 10 N, V DNA-directed RNA polymerase subunit N 69014   2.7.7.6   
82 1WCM 10 J DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE 4932   2.7.7.6   
83 2JA7 13 J, V DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932   2.7.7.6   
84 4X6A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
85 4X67 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 559292  
86 1Y1W 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
87 3QT1 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932   2.7.7.6   
88 3K7A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
89 2JA8 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932   2.7.7.6   
90 2JA5 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932   2.7.7.6   
91 2NVX 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
92 2B63 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
93 3GTQ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
94 3GTP 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
95 1Y1V 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
96 3GTO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932  
97 3H0G 10 J, V DNA-directed RNA polymerases I, II, and III subunit RPABC5 284812  
98 3FKI 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932  
99 1Y1Y 12 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
100 1SFO 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
101 2Y0S 12 N, O DNA-DIRECTED RNA POLYMERASE SUBUNIT N 2286   2.7.7.6   
102 2E2H 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
103 2JA6 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932   2.7.7.6   
104 2NVZ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
105 2WB1 12 N, O DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT 2286   2.7.7.6   
106 4V8S 6 AO, BN DNA-DIRECTED RNA POLYMERASE SUBUNIT N RPO10 523848   2.7.7.6   
107 1Y77 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
108 1NIK 10 J DNA-directed RNA polymerase II, chain RPB10 4932   2.7.7.6   
109 1R9S 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
110 1R5U 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
111 2B8K 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932   2.7.7.6   
112 4V1M 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
113 4V1N 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
114 4V1O 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932  
115 3J1N 10 J DNA-directed RNA polymerase II subunit RPABC5 4932  
116 3J0K 10 J DNA-directed RNA polymerases I/II/III subunit 10 9606   2.7.7.6   
117 1PQV 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
118 1NT9 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932   2.7.7.6   
 
Sequence Clusters for the Sequence Entities in PDB 4BY7
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 206
95% 16 103 289
90% 16 103 303
70% 16 103 325
50% 16 104 348
40% 16 104 379
30% 16 104 384
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 109 189
95% 18 109 263
90% 18 109 276
70% 18 110 292
50% 18 118 276
40% 18 118 312
30% 18 118 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 105 201
95% 16 105 286
90% 16 105 297
70% 16 105 320
50% 16 105 352
40% 16 106 370
30% 16 106 376
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 108 192
95% 18 108 266
90% 18 108 280
70% 18 108 301
50% 18 108 329
40% 18 108 363
30% 18 108 366
Entity #13: Chains: N - , 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 23088
95% 1 3 19290
90% 1 3 18704
70% 1 3 17208
50% 1 3 15054
40% 1 3 13489
30% 1 3 11577
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 104 203
95% 16 105 285
90% 16 105 296
70% 16 105 319
50% 16 106 337
40% 16 114 321
30% 16 114 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 103 207
95% 16 103 290
90% 16 103 304
70% 16 103 326
50% 16 104 350
40% 16 104 381
30% 16 104 387
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 7 51 468
95% 7 51 676
90% 7 51 712
70% 7 52 757
50% 7 52 848
40% 7 52 869
30% 7 52 869
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 110 184
95% 19 110 257
90% 19 110 270
70% 19 110 294
50% 19 111 313
40% 19 111 346
30% 19 111 354
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 107 193
95% 18 107 272
90% 18 107 285
70% 18 107 306
50% 18 109 319
40% 18 109 350
30% 18 109 359
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 53 441
95% 8 53 642
90% 8 53 674
70% 8 53 727
50% 9 55 720
40% 9 55 748
30% 9 55 746
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 53401
95% 18 110 258
90% 18 110 271
70% 18 110 295
50% 18 110 320
40% 18 110 351
30% 18 112 351
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 104 205
95% 16 104 288
90% 16 104 302
70% 16 104 324
50% 16 105 345
40% 16 105 377
30% 16 105 382
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.