Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 113 206
95 % 17 113 288
90 % 17 113 302
70 % 17 113 326
50 % 17 123 327
40 % 17 123 353
30 % 17 123 362
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 124 176
95 % 19 124 241
90 % 19 124 251
70 % 19 134 254
50 % 19 142 252
40 % 19 142 273
30 % 19 142 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 203
95 % 17 115 285
90 % 17 115 299
70 % 17 115 323
50 % 17 115 354
40 % 17 116 376
30 % 17 116 382
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 120 181
95 % 18 120 251
90 % 18 120 260
70 % 18 120 296
50 % 18 120 325
40 % 18 120 351
30 % 18 120 359
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25611
95 % 1 3 21275
90 % 1 3 20596
70 % 1 3 18882
50 % 1 3 16447
40 % 1 3 14687
30 % 1 3 12565
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 204
95 % 17 115 281
90 % 17 115 295
70 % 17 115 319
50 % 17 125 321
40 % 17 133 307
30 % 17 136 310
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 209
95 % 16 110 299
90 % 16 110 314
70 % 16 110 334
50 % 16 111 360
40 % 16 111 393
30 % 16 111 395
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 59 445
95 % 8 59 652
90 % 8 59 696
70 % 8 60 709
50 % 8 62 755
40 % 8 62 789
30 % 8 62 793
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 125 171
95 % 20 125 235
90 % 20 125 246
70 % 20 125 277
50 % 20 126 308
40 % 20 135 301
30 % 20 135 317
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 119 186
95 % 18 119 252
90 % 18 119 261
70 % 18 119 298
50 % 18 130 294
40 % 18 130 318
30 % 18 130 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 62 396
95 % 9 62 579
90 % 9 62 609
70 % 9 62 657
50 % 10 73 575
40 % 10 73 608
30 % 10 73 619
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58612
95 % 19 125 236
90 % 19 125 247
70 % 19 125 279
50 % 19 125 316
40 % 19 125 336
30 % 19 136 313
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 205
95 % 17 114 287
90 % 17 114 301
70 % 17 114 325
50 % 17 115 347
40 % 17 115 380
30 % 17 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4C2M 13 J, Y DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
2 1TWF 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
3 3S14 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
4 3CQZ 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
5 3PO2 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
6 3RZO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
7 3PO3 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
8 3S1M 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
9 4A3E 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
10 4C3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
11 3S1R 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
12 4A3D 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
13 3S1N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
14 5IP7 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
15 4A3F 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
16 4A93 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
17 1K83 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 1I50 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 4BY7 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
20 3S2D 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
21 4A3C 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
22 4A3K 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
23 3S15 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
24 4A3L 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
25 4BXX 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
26 3S1Q 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
27 3S16 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
28 3S17 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
29 4A3G 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
30 4A3B 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
31 4BBR 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
32 2NVQ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
33 3RZD 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
34 4A3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
35 3S2H 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
36 3M3Y 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
37 4A3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
38 4BY1 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
39 4A3M 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
40 4Y7N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
41 5IP9 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
42 1I3Q 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
43 4BBS 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
44 4C3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
45 4C3H 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
46 1TWC 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
47 4Y52 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
48 3HOU 10 J, V DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
49 3HOY 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
50 3HOV 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
51 1TWA 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
52 5C3E 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
53 4AYB 11 N DNA-DIRECTED RNA POLYMERASE RPO10 2286 2.7.7.6 | Details
54 2NVT 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
55 3HOZ 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
56 3HOW 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
57 3HOX 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
58 1I6H 10 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
59 2R92 12 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
60 2R7Z 13 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
61 1R9T 11 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
62 3I4M 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
63 3H3V 10 K DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
64 1TWH 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
65 2NVY 8 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
66 2E2J 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
67 5C4X 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
68 2VUM 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
69 5C44 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
70 3M4O 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
71 5C4J 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
72 2R93 11 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
73 1TWG 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
74 3GTM 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
75 3I4N 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
76 3HKZ 11 N, W DNA-directed RNA polymerase subunit N 2287 2.7.7.6 | Details
77 2WAQ 11 N DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT 2286 2.7.7.6 | Details
78 2E2I 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
79 3GTL 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
80 2PMZ 10 N, Y DNA-directed RNA polymerase subunit N 2287 2.7.7.6 | Details
81 4BXZ 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
82 3GTK 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
83 5C4A 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
84 3K1F 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
85 3GTJ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
86 3GTG 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
87 2YU9 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
88 4QIW 10 N, V DNA-directed RNA polymerase subunit N 311400 2.7.7.6 | Details
89 1WCM 10 J DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
90 2JA7 13 J, V DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
91 4X6A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
92 4X67 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
93 1Y1W 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
94 3QT1 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
95 3K7A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
96 2JA8 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
97 2JA5 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
98 2NVX 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
99 2B63 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
100 3GTQ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
101 3GTP 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
102 4YM7 10 AJ, BJ, CJ, DJ, EJ, FJ DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
103 1Y1V 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
104 3GTO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
105 3H0G 10 J, V DNA-directed RNA polymerases I, II, and III subunit RPABC5 4896
106 3FKI 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
107 1Y1Y 12 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
108 1SFO 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
109 2Y0S 12 N, O DNA-DIRECTED RNA POLYMERASE SUBUNIT N 2286 2.7.7.6 | Details
110 2E2H 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
111 2JA6 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
112 2NVZ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
113 2WB1 12 N, O DNA-DIRECTED RNA POLYMERASE RPO10 SUBUNIT 2286 2.7.7.6 | Details
114 4V8S 6 AO, BN DNA-DIRECTED RNA POLYMERASE SUBUNIT N RPO10 2286 2.7.7.6 | Details
115 1Y77 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
116 1NIK 10 J DNA-directed RNA polymerase II, chain RPB10 4932 2.7.7.6 | Details
117 1R9S 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
118 1R5U 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
119 2B8K 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
120 5G5L 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
121 5IY6 10 J DNA-directed RNA polymerase II subunit RPB10 9606
122 5IY7 10 J DNA-directed RNA polymerase II subunit RPB10 9606
123 5IY8 10 J DNA-directed RNA polymerase II subunit RPB10 9606
124 5IY9 10 J DNA-directed RNA polymerase II subunit RPB10 9606
125 5IYA 10 J DNA-directed RNA polymerase II subunit RPB10 9606
126 5IYB 10 J DNA-directed RNA polymerase II subunit RPB10 9606
127 5IYC 10 J DNA-directed RNA polymerase II subunit RPB10 9606
128 5IYD 10 J DNA-directed RNA polymerase II subunit RPB10 9606
129 5FYW 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
130 5FZ5 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
131 5FMF 12 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 4932
132 5FLM 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 9913
133 5FJ8 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
134 5FJ9 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
135 5FJA 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
136 4V1M 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
137 4V1N 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
138 4V1O 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
139 3J1N 10 J DNA-directed RNA polymerase II subunit RPABC5 4932
140 3J0K 10 J DNA-directed RNA polymerases I/II/III subunit 10 9606 2.7.7.6 | Details
141 1PQV 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
142 1NT9 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details