Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 109 204
95 % 16 109 285
90 % 16 109 298
70 % 16 109 321
50 % 16 111 331
40 % 16 111 363
30 % 16 111 372
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 119 161
95 % 18 119 223
90 % 18 119 234
70 % 18 121 258
50 % 18 129 257
40 % 18 129 278
30 % 18 129 295
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 111 198
95 % 16 111 281
90 % 16 111 294
70 % 16 111 317
50 % 16 111 341
40 % 16 112 362
30 % 16 112 370
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 117 165
95 % 18 117 233
90 % 18 117 243
70 % 18 117 272
50 % 18 117 309
40 % 18 117 335
30 % 18 117 345
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24322
95 % 1 3 20288
90 % 1 3 19648
70 % 1 3 18016
50 % 1 3 15716
40 % 1 3 14054
30 % 1 3 12046
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 200
95 % 16 111 279
90 % 16 111 292
70 % 16 111 314
50 % 16 113 328
40 % 16 121 314
30 % 16 124 320
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 108 207
95 % 16 108 289
90 % 16 108 302
70 % 16 108 323
50 % 16 109 342
40 % 16 109 373
30 % 16 109 378
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 55 452
95 % 7 55 647
90 % 7 55 682
70 % 7 56 726
50 % 7 58 780
40 % 7 58 806
30 % 7 58 799
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 120 158
95 % 19 120 218
90 % 19 120 229
70 % 19 120 263
50 % 19 121 293
40 % 19 122 313
30 % 19 122 327
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 116 167
95 % 18 116 236
90 % 18 116 245
70 % 18 116 275
50 % 18 119 298
40 % 18 119 325
30 % 18 119 334
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 58 397
95 % 8 58 590
90 % 8 58 623
70 % 8 58 671
50 % 9 61 679
40 % 9 61 713
30 % 9 61 714
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55885
95 % 18 120 220
90 % 18 120 231
70 % 18 120 265
50 % 18 120 299
40 % 18 120 326
30 % 18 123 324
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 203
95 % 16 110 284
90 % 16 110 297
70 % 16 110 320
50 % 16 111 333
40 % 16 111 365
30 % 16 114 366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4C2M 13 J, Y DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
2 1TWF 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
3 3S14 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
4 3CQZ 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
5 3PO2 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
6 3RZO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
7 3PO3 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
8 3S1M 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
9 4A3E 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
10 4C3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
11 3S1R 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
12 4A3D 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
13 3S1N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
14 4A3F 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
15 4A93 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
16 1K83 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
17 1I50 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 4BY7 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
19 3S2D 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
20 4A3C 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
21 4A3K 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
22 3S15 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
23 4A3L 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
24 4BXX 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
25 3S1Q 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
26 3S16 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
27 3S17 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
28 4A3G 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
29 4A3B 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
30 4BBR 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
31 2NVQ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
32 3RZD 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
33 4A3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
34 3S2H 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
35 3M3Y 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
36 4A3I 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
37 4BY1 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
38 4A3M 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932
39 4Y7N 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
40 1I3Q 8 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
41 4BBS 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
42 4C3J 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
43 4C3H 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
44 1TWC 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
45 4Y52 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
46 3HOU 10 J, V DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
47 3HOY 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
48 3HOV 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
49 1TWA 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
50 5C3E 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
51 2NVT 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
52 3HOZ 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
53 3HOW 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
54 3HOX 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
55 1I6H 10 J DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE 4932 2.7.7.6 | Details
56 2R92 12 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
57 2R7Z 13 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
58 1R9T 11 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
59 3I4M 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
60 3H3V 10 K DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
61 1TWH 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
62 2NVY 8 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
63 2E2J 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
64 5C4X 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
65 2VUM 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
66 5C44 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
67 3M4O 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
68 5C4J 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
69 2R93 11 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
70 1TWG 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
71 3GTM 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
72 3I4N 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
73 2E2I 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
74 3GTL 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
75 4BXZ 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 4932 2.7.7.6 | Details
76 3GTK 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
77 5C4A 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
78 3K1F 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
79 3GTJ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
80 3GTG 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
81 2YU9 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
82 1WCM 10 J DNA-DIRECTED RNA POLYMERASES I, II AND III 8.3 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
83 2JA7 13 J, V DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
84 4X6A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
85 4X67 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
86 1Y1W 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
87 3QT1 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932 2.7.7.6 | Details
88 3K7A 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
89 2JA8 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
90 2JA5 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
91 2NVX 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
92 2B63 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
93 3GTQ 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
94 3GTP 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
95 4YM7 10 AJ, BJ, CJ, DJ, EJ, FJ DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
96 1Y1V 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
97 3GTO 8 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 DNA-directed RNA polymerases I/II/III subunit 10 4932
98 3FKI 10 J DNA-directed RNA polymerases I, II, and III subunit RPABC5 4932
99 1Y1Y 12 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
100 1SFO 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
101 2E2H 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
102 2JA6 10 J DNA-DIRECTED RNA POLYMERASES I/II/III SUBUNIT 10 4932 2.7.7.6 | Details
103 2NVZ 11 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
104 1Y77 13 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
105 1NIK 10 J DNA-directed RNA polymerase II, chain RPB10 4932 2.7.7.6 | Details
106 1R9S 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
107 1R5U 8 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
108 2B8K 10 J DNA-directed RNA polymerases I/II/III subunit 10 4932 2.7.7.6 | Details
109 5FMF 12 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5, RPB10 4932
110 5FJ8 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
111 5FJ9 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
112 5FJA 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
113 4V1M 8 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
114 4V1N 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
115 4V1O 10 J DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 4932
116 3J1N 10 J DNA-directed RNA polymerase II subunit RPABC5 4932
117 3J0K 10 J DNA-directed RNA polymerases I/II/III subunit 10 9606 2.7.7.6 | Details
118 1PQV 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details
119 1NT9 10 J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide 4932 2.7.7.6 | Details