Sequence Similarity Clusters for the Entities in PDB 4BY7

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 113 206
95 % 17 113 289
90 % 17 113 303
70 % 17 113 327
50 % 17 123 327
40 % 17 123 353
30 % 17 123 362
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 124 176
95 % 19 124 241
90 % 19 124 251
70 % 19 134 254
50 % 19 142 252
40 % 19 142 273
30 % 19 142 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 115 203
95 % 17 115 286
90 % 17 115 300
70 % 17 115 324
50 % 17 115 355
40 % 17 116 377
30 % 17 116 383
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 120 181
95 % 18 120 251
90 % 18 120 260
70 % 18 120 296
50 % 18 120 325
40 % 18 120 351
30 % 18 120 359
Entity #13 | Chains: N
, 5'-D(*DAP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*DTP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*DAP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DAP *TP*TP*CP*CP*BP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 25648
95 % 1 3 21308
90 % 1 3 20626
70 % 1 3 18913
50 % 1 3 16475
40 % 1 3 14712
30 % 1 3 12586
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 204
95 % 17 115 282
90 % 17 115 296
70 % 17 115 320
50 % 17 125 321
40 % 17 133 307
30 % 17 136 311
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 110 209
95 % 16 110 301
90 % 16 110 316
70 % 16 110 336
50 % 16 111 362
40 % 16 111 394
30 % 16 111 397
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 59 453
95 % 8 59 661
90 % 8 59 706
70 % 8 60 722
50 % 8 62 756
40 % 8 62 791
30 % 8 62 794
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 125 171
95 % 20 125 235
90 % 20 125 246
70 % 20 125 277
50 % 20 126 308
40 % 20 135 301
30 % 20 135 318
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 119 186
95 % 18 119 252
90 % 18 119 262
70 % 18 119 299
50 % 18 130 294
40 % 18 130 318
30 % 18 130 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 62 404
95 % 9 62 593
90 % 9 62 626
70 % 9 62 665
50 % 10 73 580
40 % 10 73 610
30 % 10 73 621
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58703
95 % 19 125 236
90 % 19 125 247
70 % 19 125 279
50 % 19 125 316
40 % 19 125 336
30 % 19 136 314
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 114 205
95 % 17 114 288
90 % 17 114 302
70 % 17 114 326
50 % 17 115 348
40 % 17 115 381
30 % 17 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.