Sequence Similarity Clusters for the Entities in PDB 4BY1

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 113 206
95 % 36 113 291
90 % 36 113 305
70 % 36 113 329
50 % 36 123 328
40 % 36 123 355
30 % 36 123 363
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 124 176
95 % 38 124 242
90 % 38 124 251
70 % 38 134 256
50 % 38 142 252
40 % 38 142 273
30 % 38 142 290
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 115 203
95 % 36 115 289
90 % 36 115 302
70 % 36 115 326
50 % 36 115 357
40 % 36 116 380
30 % 36 116 383
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 120 183
95 % 37 120 253
90 % 37 120 261
70 % 37 120 298
50 % 37 120 327
40 % 37 120 353
30 % 37 120 360
Entity #13 | Chains: N
5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25819
95 % 3 3 21435
90 % 3 3 20751
70 % 3 3 19031
50 % 3 3 16564
40 % 3 3 14790
30 % 3 3 12650
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44841
95 % 36 115 286
90 % 36 115 298
70 % 36 115 322
50 % 36 125 323
40 % 36 133 309
30 % 36 136 313
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 110 209
95 % 35 110 301
90 % 35 110 316
70 % 35 110 337
50 % 35 111 364
40 % 35 111 397
30 % 35 111 398
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 59 454
95 % 18 59 668
90 % 18 59 713
70 % 18 60 734
50 % 18 62 767
40 % 18 62 803
30 % 18 62 802
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 125 171
95 % 39 125 236
90 % 39 125 246
70 % 39 125 277
50 % 39 126 309
40 % 39 135 303
30 % 39 135 321
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 119 188
95 % 37 119 254
90 % 37 119 262
70 % 37 119 299
50 % 37 130 295
40 % 37 130 318
30 % 37 130 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 62 405
95 % 19 62 596
90 % 19 62 629
70 % 19 62 672
50 % 20 73 583
40 % 20 73 616
30 % 20 73 628
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 124 175
95 % 38 125 237
90 % 38 125 247
70 % 38 125 279
50 % 38 125 317
40 % 38 125 338
30 % 38 136 316
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 114 205
95 % 36 114 290
90 % 36 114 304
70 % 36 114 328
50 % 36 115 351
40 % 36 115 384
30 % 36 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.