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elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP
Sequence Clustering and Redundancy Reduction Results
4BY1
Sequence Clusters for the Sequence Entities in PDB 4BY1
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 101 206
95% 35 101 290
90% 35 101 308
70% 35 101 327
50% 35 102 351
40% 35 102 379
30% 35 102 383
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 107 188
95% 37 107 268
90% 37 107 281
70% 37 108 291
50% 37 116 276
40% 37 116 308
30% 37 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 103 201
95% 35 103 286
90% 35 103 302
70% 35 103 320
50% 35 103 355
40% 35 104 374
30% 35 104 378
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 106 190
95% 37 106 270
90% 37 106 284
70% 37 106 302
50% 37 106 331
40% 37 106 362
30% 37 106 368
Entity #13: Chains: N - 5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 22796
95% 3 3 19051
90% 3 3 18483
70% 3 3 17022
50% 3 3 14893
40% 3 3 13351
30% 3 3 11461
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39914
95% 35 103 283
90% 35 103 297
70% 35 103 317
50% 35 104 343
40% 35 112 323
30% 35 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 101 207
95% 35 101 291
90% 35 101 309
70% 35 101 328
50% 35 102 353
40% 35 102 382
30% 35 102 387
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 51 456
95% 17 51 663
90% 17 51 695
70% 17 52 743
50% 17 52 833
40% 17 52 854
30% 17 52 857
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 108 186
95% 38 108 260
90% 38 108 274
70% 38 108 293
50% 38 109 312
40% 38 109 341
30% 38 109 350
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 105 194
95% 37 105 278
90% 37 105 290
70% 37 105 309
50% 37 107 320
40% 37 107 353
30% 37 107 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 53 431
95% 18 53 628
90% 18 53 658
70% 18 53 709
50% 19 55 704
40% 19 55 736
30% 19 55 737
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 107 187
95% 37 108 261
90% 37 108 275
70% 37 108 294
50% 37 108 321
40% 37 108 354
30% 37 110 348
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 102 205
95% 35 102 289
90% 35 102 307
70% 35 102 325
50% 35 103 349
40% 35 103 377
30% 35 103 381
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.