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elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP
Sequence Clustering and Redundancy Reduction Results
4BY1
Sequence Clusters for the Sequence Entities in PDB 4BY1
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 101 206
95% 35 101 290
90% 35 101 305
70% 35 101 324
50% 35 102 350
40% 35 102 377
30% 35 102 382
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 107 188
95% 37 107 267
90% 37 107 279
70% 37 108 289
50% 37 116 276
40% 37 116 306
30% 37 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 103 201
95% 35 103 286
90% 35 103 301
70% 35 103 318
50% 35 103 354
40% 35 104 372
30% 35 104 377
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 106 190
95% 37 106 269
90% 37 106 283
70% 37 106 301
50% 37 106 330
40% 37 106 360
30% 37 106 367
Entity #13: Chains: N - 5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 22636
95% 3 3 18912
90% 3 3 18346
70% 3 3 16914
50% 3 3 14808
40% 3 3 13274
30% 3 3 11394
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39630
95% 35 103 283
90% 35 103 297
70% 35 103 316
50% 35 104 342
40% 35 112 320
30% 35 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 101 207
95% 35 101 291
90% 35 101 306
70% 35 101 325
50% 35 102 352
40% 35 102 380
30% 35 102 386
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 51 452
95% 17 51 656
90% 17 51 689
70% 17 52 733
50% 17 52 823
40% 17 52 844
30% 17 52 849
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 108 186
95% 38 108 259
90% 38 108 272
70% 38 108 291
50% 38 109 310
40% 38 109 338
30% 38 109 349
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 105 194
95% 37 105 278
90% 37 105 290
70% 37 105 308
50% 37 107 320
40% 37 107 352
30% 37 107 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 53 429
95% 18 53 625
90% 18 53 655
70% 18 53 705
50% 19 55 701
40% 19 55 731
30% 19 55 732
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 107 187
95% 37 108 260
90% 37 108 273
70% 37 108 292
50% 37 108 321
40% 37 108 353
30% 37 110 347
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 102 205
95% 35 102 289
90% 35 102 304
70% 35 102 323
50% 35 103 348
40% 35 103 375
30% 35 103 380
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.