Sequence Similarity Clusters for the Entities in PDB 4BY1

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 113 203
95 % 36 113 285
90 % 36 113 299
70 % 36 113 321
50 % 36 123 314
40 % 36 123 342
30 % 36 123 351
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 123 159
95 % 38 123 222
90 % 38 123 234
70 % 38 133 214
50 % 38 141 241
40 % 38 141 267
30 % 38 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 115 199
95 % 36 115 280
90 % 36 115 293
70 % 36 115 318
50 % 36 115 343
40 % 36 116 361
30 % 36 116 373
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 119 164
95 % 37 119 234
90 % 37 119 244
70 % 37 119 278
50 % 37 119 313
40 % 37 119 341
30 % 37 119 350
Entity #13 | Chains: N
5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25062
95 % 3 3 20870
90 % 3 3 20216
70 % 3 3 18532
50 % 3 3 16156
40 % 3 3 14449
30 % 3 3 12372
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43623
95 % 36 115 277
90 % 36 115 290
70 % 36 115 316
50 % 36 125 308
40 % 36 133 292
30 % 36 136 300
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 110 207
95 % 35 110 294
90 % 35 110 308
70 % 35 110 329
50 % 35 111 347
40 % 35 111 380
30 % 35 111 385
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 59 425
95 % 18 59 628
90 % 18 59 667
70 % 18 60 687
50 % 18 62 748
40 % 18 62 778
30 % 18 62 783
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 124 152
95 % 39 124 212
90 % 39 124 224
70 % 39 124 257
50 % 39 125 293
40 % 39 134 291
30 % 39 134 311
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 118 167
95 % 37 118 239
90 % 37 118 250
70 % 37 118 283
50 % 37 129 278
40 % 37 129 305
30 % 37 129 327
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 62 382
95 % 19 62 564
90 % 19 62 596
70 % 19 62 643
50 % 20 73 553
40 % 20 73 592
30 % 20 73 597
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 123 158
95 % 38 124 216
90 % 38 124 227
70 % 38 124 261
50 % 38 124 304
40 % 38 124 326
30 % 38 135 306
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 114 202
95 % 36 114 284
90 % 36 114 298
70 % 36 114 320
50 % 36 115 339
40 % 36 115 365
30 % 36 118 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.