Sequence Similarity Clusters for the Entities in PDB 4BY1

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 114 213
95 % 36 114 302
90 % 36 114 317
70 % 36 114 356
50 % 36 124 368
40 % 36 124 398
30 % 36 124 399
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 131 174
95 % 38 131 238
90 % 38 131 248
70 % 38 141 264
50 % 38 149 259
40 % 38 149 282
30 % 38 149 290
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 116 209
95 % 36 116 297
90 % 36 116 311
70 % 36 116 349
50 % 36 116 406
40 % 36 117 429
30 % 36 117 430
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 127 180
95 % 37 127 248
90 % 37 127 256
70 % 37 127 291
50 % 37 127 326
40 % 37 127 357
30 % 37 127 361
Entity #13 | Chains: N
5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 26903
95 % 3 3 22323
90 % 3 3 21616
70 % 3 3 19822
50 % 3 3 17238
40 % 3 3 15368
30 % 3 3 13154
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46603
95 % 36 116 291
90 % 36 116 304
70 % 36 116 344
50 % 36 126 358
40 % 36 134 326
30 % 36 137 329
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 111 215
95 % 35 111 309
90 % 35 111 325
70 % 35 111 365
50 % 35 112 418
40 % 35 112 457
30 % 35 112 449
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 60 515
95 % 18 60 726
90 % 18 60 755
70 % 18 61 788
50 % 18 63 802
40 % 18 63 826
30 % 18 63 824
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 132 171
95 % 39 132 233
90 % 39 132 244
70 % 39 132 280
50 % 39 133 305
40 % 39 142 305
30 % 39 142 317
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 126 181
95 % 37 126 251
90 % 37 126 259
70 % 37 126 294
50 % 37 137 300
40 % 37 137 319
30 % 37 137 333
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 63 473
95 % 19 63 662
90 % 19 63 692
70 % 19 63 738
50 % 20 74 603
40 % 20 74 635
30 % 20 74 639
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 131 173
95 % 38 132 236
90 % 38 132 247
70 % 38 132 281
50 % 38 132 314
40 % 38 132 335
30 % 38 143 315
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 115 211
95 % 36 115 301
90 % 36 115 315
70 % 36 115 354
50 % 36 116 403
40 % 36 116 438
30 % 36 119 426

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.