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elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP
Sequence Clustering and Redundancy Reduction Results
4BY1
Sequence Clusters for the Sequence Entities in PDB 4BY1
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 96 202
95% 35 96 286
90% 35 96 299
70% 35 96 315
50% 35 97 336
40% 35 97 359
30% 35 97 372
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 102 180
95% 37 102 258
90% 37 102 268
70% 37 103 278
50% 37 103 310
40% 37 111 294
30% 37 111 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 98 199
95% 35 98 281
90% 35 98 294
70% 35 98 310
50% 35 98 345
40% 35 99 353
30% 35 99 365
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 101 185
95% 37 101 266
90% 37 101 277
70% 37 101 294
50% 37 101 325
40% 37 101 348
30% 37 101 359
Entity #13: Chains: N - 5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3' dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 21179
95% 3 3 17770
90% 3 3 17250
70% 3 3 15896
50% 3 3 13948
40% 3 3 12514
30% 3 3 10781
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37002
95% 35 98 278
90% 35 98 291
70% 35 98 308
50% 35 99 329
40% 35 107 301
30% 35 107 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 96 204
95% 35 96 287
90% 35 96 300
70% 35 96 317
50% 35 97 339
40% 35 97 361
30% 35 97 374
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 49 441
95% 17 49 639
90% 17 49 672
70% 17 50 695
50% 17 50 753
40% 17 50 765
30% 17 50 772
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 103 175
95% 38 103 248
90% 38 103 259
70% 38 103 285
50% 38 104 301
40% 38 104 327
30% 38 104 339
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 100 187
95% 37 100 270
90% 37 100 281
70% 37 100 300
50% 37 102 315
40% 37 102 337
30% 37 102 349
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 51 410
95% 18 51 597
90% 18 51 631
70% 18 51 664
50% 19 53 633
40% 19 53 659
30% 19 53 659
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 102 178
95% 37 103 249
90% 37 103 261
70% 37 103 286
50% 37 103 316
40% 37 103 338
30% 37 105 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 97 201
95% 35 97 285
90% 35 97 298
70% 35 97 314
50% 35 98 333
40% 35 98 356
30% 35 98 369
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.