Sequence Similarity Clusters for the Entities in PDB 4BY1

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 113 203
95 % 36 113 285
90 % 36 113 299
70 % 36 113 323
50 % 36 123 315
40 % 36 123 343
30 % 36 123 353
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 123 159
95 % 38 123 224
90 % 38 123 235
70 % 38 133 214
50 % 38 141 242
40 % 38 141 268
30 % 38 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 115 200
95 % 36 115 282
90 % 36 115 295
70 % 36 115 320
50 % 36 115 344
40 % 36 116 364
30 % 36 116 375
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 119 165
95 % 37 119 235
90 % 37 119 245
70 % 37 119 280
50 % 37 119 314
40 % 37 119 342
30 % 37 119 352
Entity #13 | Chains: N
5'-D(*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*AP *TP*TP*CP*CP*BRUP*GP*GP*TP*CP*AP*AP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 25179
95 % 3 3 20958
90 % 3 3 20291
70 % 3 3 18604
50 % 3 3 16218
40 % 3 3 14500
30 % 3 3 12408
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43819
95 % 36 115 278
90 % 36 115 291
70 % 36 115 317
50 % 36 125 308
40 % 36 133 294
30 % 36 136 302
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 110 207
95 % 35 110 294
90 % 35 110 308
70 % 35 110 330
50 % 35 111 349
40 % 35 111 381
30 % 35 111 387
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 59 433
95 % 18 59 638
90 % 18 59 684
70 % 18 60 698
50 % 18 62 749
40 % 18 62 779
30 % 18 62 786
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 124 152
95 % 39 124 214
90 % 39 124 225
70 % 39 124 258
50 % 39 125 294
40 % 39 134 293
30 % 39 134 313
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 118 168
95 % 37 118 240
90 % 37 118 251
70 % 37 118 284
50 % 37 129 280
40 % 37 129 307
30 % 37 129 328
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 62 387
95 % 19 62 571
90 % 19 62 603
70 % 19 62 652
50 % 20 73 561
40 % 20 73 596
30 % 20 73 603
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 123 158
95 % 38 124 218
90 % 38 124 228
70 % 38 124 262
50 % 38 124 305
40 % 38 124 327
30 % 38 135 308
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 114 202
95 % 36 114 284
90 % 36 114 298
70 % 36 114 322
50 % 36 115 340
40 % 36 115 369
30 % 36 118 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.