Sequence Similarity Clusters for the Entities in PDB 4BXZ

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 131 248
95 % 82 131 317 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.6
PDBFlex
90 % 82 131 328
70 % 83 143 345
50 % 83 158 373
40 % 83 158 404
30 % 83 158 408
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 172 184
95 % 86 172 235 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 86 172 243
70 % 87 199 218
50 % 91 207 227
40 % 91 207 257
30 % 91 207 272
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 133 240
95 % 82 133 306 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 82 133 318
70 % 82 133 367
50 % 83 145 414
40 % 83 147 429
30 % 83 147 429
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 168 190
95 % 84 168 241 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 84 168 247
70 % 84 168 283
50 % 85 180 285
40 % 85 180 319
30 % 85 180 327
Entity #13 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 594 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52502
95 % 1 1 43373
90 % 1 1 41251
70 % 1 1 36341
50 % 1 1 30868
40 % 1 1 27048
30 % 1 1 22535
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 133 241
95 % 82 133 307 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.2
PDBFlex
90 % 82 133 319
70 % 83 147 335
50 % 83 160 365
40 % 87 168 364
30 % 165 347 142
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 80 128 252
95 % 80 128 326 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 80 128 337
70 % 80 128 383
50 % 80 128 457
40 % 80 128 494
30 % 80 128 497
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 70 597
95 % 40 70 735 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.8
PDBFlex
90 % 40 70 769
70 % 40 73 774
50 % 41 85 687
40 % 41 85 720
30 % 41 85 729
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 173 183
95 % 87 173 233 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 87 173 241
70 % 88 185 243
50 % 88 187 266
40 % 88 200 275
30 % 88 200 289
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 167 191
95 % 84 167 242 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 84 167 248
70 % 84 167 285
50 % 85 195 251
40 % 85 195 283
30 % 85 195 298
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 73 558
95 % 41 73 687 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 41 73 709
70 % 41 73 759
50 % 43 101 521
40 % 43 101 568
30 % 43 101 572
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 85 172 186
95 % 86 173 234 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 86 173 242
70 % 86 173 270
50 % 87 185 272
40 % 87 185 307
30 % 87 201 286
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 82 132 242
95 % 82 132 309 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 82 132 321
70 % 83 144 340
50 % 83 146 406
40 % 83 146 431
30 % 83 161 401

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1TWF 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
2 3S14 7 I DNA-directed RNA polymerase II subunit RPB9 4932
3 3CQZ 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
4 3PO2 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
5 3RZO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
6 3PO3 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
7 5XOG 9 I DNA-directed RNA polymerase subunit 460519
8 3S1M 7 I DNA-directed RNA polymerase II subunit RPB9 4932
9 4A3E 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
10 5OT2 9 I DNA-directed RNA polymerase II subunit RPB9 4932
11 3S1R 7 I DNA-directed RNA polymerase II subunit RPB9 4932
12 4A3D 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
13 3S1N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
14 5IP7 9 I DNA-directed RNA polymerase II subunit RPB9 4932
15 4A3F 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
16 4A93 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
17 1K83 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
18 1I50 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
19 4BY7 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
20 3S2D 7 I DNA-directed RNA polymerase II subunit RPB9 4932
21 4A3C 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
22 4A3K 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
23 3S15 7 I DNA-directed RNA polymerase II subunit RPB9 4932
24 4A3L 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
25 4BXX 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
26 3S1Q 7 I DNA-directed RNA polymerase II subunit RPB9 4932
27 3S16 7 I DNA-directed RNA polymerase II subunit RPB9 4932
28 3S17 7 I DNA-directed RNA polymerase II subunit RPB9 4932
29 4A3G 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
30 4A3B 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
31 4BBR 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
32 2NVQ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
33 3RZD 7 I DNA-directed RNA polymerase II subunit RPB9 4932
34 4A3J 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
35 3S2H 7 I DNA-directed RNA polymerase II subunit RPB9 4932
36 3M3Y 7 I DNA-directed RNA polymerase II subunit RPB9 4932
37 4A3I 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
38 6BM4 7 I DNA-directed RNA polymerase II subunit RPB9 4932
39 4BY1 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
40 4A3M 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
41 6BLP 7 I DNA-directed RNA polymerase II subunit RPB9 4932
42 4Y7N 7 I DNA-directed RNA polymerase II subunit RPB9 4932
43 5IP9 9 I DNA-directed RNA polymerase II subunit RPB9 4932
44 1I3Q 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
45 4BBS 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
46 6BLO 7 I DNA-directed RNA polymerase II subunit RPB9 4932
47 1TWC 7 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
48 4Y52 7 I DNA-directed RNA polymerase II subunit RPB9 4932
49 6BQF 7 I DNA-directed RNA polymerase II subunit RPB9 4932
50 3HOU 9 I, U DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
51 3HOY 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
52 3HOV 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
53 6BM2 7 I DNA-directed RNA polymerase II subunit RPB9 4932
54 1TWA 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
55 5C3E 9 I DNA-directed RNA polymerase II subunit RPB9 4932
56 5W51 7 I DNA-directed RNA polymerase II subunit RPB9 4932
57 2NVT 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
58 3HOZ 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
59 3HOW 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
60 3HOX 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
61 1I6H 9 I DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE 4932 2.7.7.6 | Details
62 2R92 11 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
63 5W4U 7 I DNA-directed RNA polymerase II subunit RPB9 4932
64 2R7Z 12 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
65 1R9T 10 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
66 3I4M 9 I DNA-directed RNA polymerase II subunit RPB9 4932
67 3H3V 9 J DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
68 5U5Q 9 I DNA-directed RNA polymerase II subunit RPB9 4932
69 1TWH 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
70 2NVY 7 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
71 2E2J 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
72 5C4X 9 I DNA-directed RNA polymerase II subunit RPB9 4932
73 2VUM 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
74 5C44 9 I DNA-directed RNA polymerase II subunit RPB9 4932
75 3M4O 7 I DNA-directed RNA polymerase II subunit RPB9 4932
76 5C4J 7 I DNA-directed RNA polymerase II subunit RPB9 4932
77 2R93 10 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
78 1TWG 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
79 3GTM 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
80 3I4N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
81 2E2I 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
82 3GTL 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
83 4BXZ 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932 2.7.7.6 | Details
84 3GTK 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
85 5C4A 9 I DNA-directed RNA polymerase II subunit RPB9 4932
86 3K1F 9 I DNA-directed RNA polymerase II subunit RPB9 4932 2.7.7.6 | Details
87 3GTJ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
88 3GTG 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
89 2YU9 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
90 1WCM 9 I DNA-DIRECTED RNA POLYMERASE II 14.2 KDA POLYPEPTIDE 4932 2.7.7.6 | Details
91 2JA7 12 I, U DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
92 4X6A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
93 4X67 7 I DNA-directed RNA polymerase II subunit RPB9 4932
94 1Y1W 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
95 3K7A 7 I DNA-directed RNA polymerase II subunit RPB9 4932
96 5X50 9 I DNA-directed RNA polymerase subunit 460519
97 2JA8 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
98 2JA5 9 I DNA-directed RNA polymerase II subunit RPB9 4932
99 2NVX 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
100 2B63 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
101 3GTQ 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
102 3GTP 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
103 1Y1V 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
104 3GTO 7 I DNA-directed RNA polymerase II subunit RPB9 DNA-directed RNA polymerase II subunit 9 4932
105 3FKI 9 I DNA-directed RNA polymerase II subunit RPB9 4932
106 1Y1Y 11 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
107 1SFO 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
108 2E2H 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
109 2JA6 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT 9 4932 2.7.7.6 | Details
110 2NVZ 10 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
111 1Y77 12 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
112 1NIK 9 I DNA-directed RNA polymerase II, chain RPB9 4932 2.7.7.6 | Details
113 1R9S 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
114 1R5U 7 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
115 2B8K 9 I DNA-directed RNA polymerase II subunit 9 4932 2.7.7.6 | Details
116 5X51 9 I, U DNA-directed RNA polymerase subunit 460519
117 5X4Z 9 I, U DNA-directed RNA polymerase subunit 460519
118 6I84 15 I DNA-directed RNA polymerase II subunit RPB9 4932
119 6GYK 9 I DNA-directed RNA polymerase II subunit RPB9 4932
120 6GYL 9 I DNA-directed RNA polymerase II subunit RPB9 4932
121 6GYM 17 I DNA-directed RNA polymerase II subunit RPB9 4932
122 6A5O 9 I DNA-directed RNA polymerase subunit 460519
123 6A5P 9 I DNA-directed RNA polymerase subunit 460519
124 6A5R 9 I DNA-directed RNA polymerase subunit 460519
125 6A5T 9 I DNA-directed RNA polymerase subunit 460519
126 6A5U 9 I DNA-directed RNA polymerase subunit 460519
127 6A5V 9 I DNA-directed RNA polymerase subunit 460519
128 6A5L 9 I DNA-directed RNA polymerase subunit 460519
129 5OQM 9 I DNA-directed RNA polymerase II subunit RPB9 4932
130 5OQJ 9 I DNA-directed RNA polymerase II subunit RPB9 4932
131 5XON 9 I DNA-directed RNA polymerase subunit 460519
132 5VVS 9 I DNA-directed RNA polymerase II subunit RPB9 4932
133 5VVR 9 I DNA-directed RNA polymerase II subunit RPB9 4932
134 5SVA 9 I DNA-directed RNA polymerase II subunit RPB9 4932
135 5FYW 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
136 5FZ5 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
137 5FMF 11 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
138 4V1M 7 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
139 4V1N 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
140 4V1O 9 I DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 4932
141 3J1N 9 I DNA-directed RNA polymerase II subunit RPB9 4932
142 3J0K 9 I DNA-directed RNA polymerase II subunit 9 9606 2.7.7.6 | Details
143 1PQV 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details
144 1NT9 9 I DNA-directed RNA polymerase II 14.2 kDa polypeptide 4932 2.7.7.6 | Details