Sequence Similarity Clusters for the Entities in PDB 4BXZ

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 109 204
95 % 71 109 285
90 % 71 109 298
70 % 71 109 321
50 % 71 111 331
40 % 71 111 363
30 % 71 111 372
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 119 161
95 % 75 119 223
90 % 75 119 234
70 % 75 121 258
50 % 79 129 257
40 % 79 129 278
30 % 79 129 295
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 111 198
95 % 71 111 281
90 % 71 111 294
70 % 71 111 317
50 % 71 111 341
40 % 71 112 362
30 % 71 112 370
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 117 165
95 % 75 117 233
90 % 75 117 243
70 % 75 117 272
50 % 75 117 309
40 % 75 117 335
30 % 75 117 345
Entity #13 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 594 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 43174
95 % 1 1 32131
90 % 1 1 30786
70 % 1 1 27606
50 % 1 1 23804
40 % 1 1 21151
30 % 1 1 18051
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 70 110 200
95 % 71 111 279
90 % 71 111 292
70 % 71 111 314
50 % 71 113 328
40 % 75 121 314
30 % 75 124 320
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 108 207
95 % 71 108 289
90 % 71 108 302
70 % 71 108 323
50 % 71 109 342
40 % 71 109 373
30 % 71 109 378
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 55 452
95 % 36 55 647
90 % 36 55 682
70 % 36 56 726
50 % 36 58 780
40 % 36 58 806
30 % 36 58 799
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 120 158
95 % 76 120 218
90 % 76 120 229
70 % 76 120 263
50 % 76 121 293
40 % 76 122 313
30 % 76 122 327
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 116 167
95 % 75 116 236
90 % 75 116 245
70 % 75 116 275
50 % 75 119 298
40 % 75 119 325
30 % 75 119 334
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 58 397
95 % 37 58 590
90 % 37 58 623
70 % 37 58 671
50 % 38 61 679
40 % 38 61 713
30 % 38 61 714
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 119 160
95 % 75 120 220
90 % 75 120 231
70 % 75 120 265
50 % 75 120 299
40 % 75 120 326
30 % 75 123 324
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 110 203
95 % 71 110 284
90 % 71 110 297
70 % 71 110 320
50 % 71 111 333
40 % 71 111 365
30 % 71 114 366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.