Sequence Similarity Clusters for the Entities in PDB 4BXZ

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 115 229
95 % 74 115 321
90 % 74 115 339
70 % 75 120 356
50 % 75 132 368
40 % 75 132 393
30 % 75 132 397
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 142 175
95 % 78 142 236
90 % 78 142 250
70 % 79 159 250
50 % 83 167 246
40 % 83 167 264
30 % 83 167 270
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 117 224
95 % 74 117 315
90 % 74 117 333
70 % 74 117 369
50 % 75 122 416
40 % 75 124 434
30 % 75 124 435
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 138 183
95 % 76 138 244
90 % 76 138 259
70 % 76 138 289
50 % 77 143 313
40 % 77 143 328
30 % 77 143 336
Entity #13 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 594 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50037
95 % 1 1 37149
90 % 1 1 35500
70 % 1 1 31653
50 % 1 1 27157
40 % 1 1 24044
30 % 1 1 20498
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 116 226
95 % 74 117 313
90 % 74 117 329
70 % 75 124 339
50 % 75 134 357
40 % 79 142 324
30 % 79 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 112 232
95 % 72 112 326
90 % 72 112 345
70 % 72 112 378
50 % 72 114 439
40 % 72 114 470
30 % 72 114 471
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 61 563
95 % 39 61 781
90 % 39 61 809
70 % 39 62 833
50 % 40 69 753
40 % 40 69 785
30 % 40 69 780
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 79 143 172
95 % 79 143 233
90 % 79 143 248
70 % 80 148 271
50 % 80 150 291
40 % 80 160 284
30 % 80 160 293
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 137 185
95 % 76 137 247
90 % 76 137 262
70 % 76 137 294
50 % 77 155 279
40 % 77 155 298
30 % 77 155 307
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 64 522
95 % 40 64 715
90 % 40 64 745
70 % 40 64 796
50 % 42 82 567
40 % 42 82 605
30 % 42 82 595
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 142 174
95 % 78 143 234
90 % 78 143 249
70 % 78 143 280
50 % 79 148 296
40 % 79 148 311
30 % 79 161 292
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 116 228
95 % 74 116 320
90 % 74 116 338
70 % 75 121 355
50 % 75 123 406
40 % 75 123 436
30 % 75 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.