POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

RNA Polymerase II-Bye1 complex
Sequence Clustering and Redundancy Reduction Results
4BXZ
Sequence Clusters for the Sequence Entities in PDB 4BXZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 101 206
95% 65 101 290
90% 65 101 305
70% 65 101 324
50% 65 102 349
40% 65 102 376
30% 65 102 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 107 188
95% 69 107 266
90% 69 107 278
70% 69 108 289
50% 73 116 275
40% 73 116 305
30% 73 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 103 201
95% 65 103 286
90% 65 103 301
70% 65 103 318
50% 65 103 353
40% 65 104 370
30% 65 104 375
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 106 190
95% 69 106 268
90% 69 106 282
70% 69 106 300
50% 69 106 328
40% 69 106 358
30% 69 106 366
Entity #13: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 594 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40317
95% 1 1 30124
90% 1 1 28936
70% 1 1 26028
50% 1 1 22506
40% 1 1 20029
30% 1 1 17138
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 102 203
95% 65 103 283
90% 65 103 297
70% 65 103 316
50% 65 104 340
40% 69 112 319
30% 69 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 101 207
95% 65 101 291
90% 65 101 306
70% 65 101 325
50% 65 102 351
40% 65 102 379
30% 65 102 385
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 51 452
95% 33 51 656
90% 33 51 689
70% 33 52 733
50% 33 52 822
40% 33 52 841
30% 33 52 847
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 108 186
95% 70 108 259
90% 70 108 272
70% 70 108 291
50% 70 109 309
40% 70 109 337
30% 70 109 349
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 105 194
95% 69 105 277
90% 69 105 289
70% 69 105 307
50% 69 107 320
40% 69 107 352
30% 69 107 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 53 427
95% 34 53 625
90% 34 53 655
70% 34 53 705
50% 35 55 701
40% 35 55 729
30% 35 55 730
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 107 187
95% 69 108 260
90% 69 108 273
70% 69 108 292
50% 69 108 321
40% 69 108 353
30% 69 110 347
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 102 205
95% 65 102 289
90% 65 102 304
70% 65 102 323
50% 65 103 347
40% 65 103 374
30% 65 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.