Sequence Similarity Clusters for the Entities in PDB 4BXZ

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 113 203
95 % 73 113 285
90 % 73 113 299
70 % 73 113 321
50 % 73 123 314
40 % 73 123 342
30 % 73 123 351
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 77 123 159
95 % 77 123 222
90 % 77 123 234
70 % 77 133 214
50 % 81 141 241
40 % 81 141 267
30 % 81 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 115 199
95 % 73 115 280
90 % 73 115 293
70 % 73 115 318
50 % 73 115 343
40 % 73 116 361
30 % 73 116 372
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 119 164
95 % 75 119 234
90 % 75 119 244
70 % 75 119 278
50 % 75 119 313
40 % 75 119 341
30 % 75 119 350
Entity #13 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 594 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 44408
95 % 1 1 33027
90 % 1 1 31636
70 % 1 1 28348
50 % 1 1 24438
40 % 1 1 21695
30 % 1 1 18500
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 72 114 200
95 % 73 115 277
90 % 73 115 290
70 % 73 115 316
50 % 73 125 308
40 % 77 133 292
30 % 77 136 300
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 110 207
95 % 71 110 294
90 % 71 110 308
70 % 71 110 329
50 % 71 111 346
40 % 71 111 379
30 % 71 111 384
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 59 412
95 % 38 59 610
90 % 38 59 647
70 % 38 60 678
50 % 38 62 745
40 % 38 62 773
30 % 38 62 781
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 78 124 152
95 % 78 124 212
90 % 78 124 224
70 % 78 124 257
50 % 78 125 293
40 % 78 134 291
30 % 78 134 311
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 75 118 166
95 % 75 118 239
90 % 75 118 250
70 % 75 118 282
50 % 75 129 278
40 % 75 129 305
30 % 75 129 326
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 62 381
95 % 39 62 561
90 % 39 62 591
70 % 39 62 638
50 % 40 73 550
40 % 40 73 585
30 % 40 73 592
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 76 123 158
95 % 77 124 216
90 % 77 124 227
70 % 77 124 261
50 % 77 124 304
40 % 77 124 326
30 % 77 135 306
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 73 114 202
95 % 73 114 284
90 % 73 114 298
70 % 73 114 320
50 % 73 115 339
40 % 73 115 365
30 % 73 118 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.