POP-OUT | CLOSE

An Information Portal to 108124 Biological Macromolecular Structures

RNA Polymerase II-Bye1 complex
Sequence Clustering and Redundancy Reduction Results
4BXZ
Sequence Clusters for the Sequence Entities in PDB 4BXZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 101 204
95% 65 101 289
90% 65 101 303
70% 65 101 320
50% 65 102 349
40% 65 102 374
30% 65 102 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 107 187
95% 69 107 263
90% 69 107 275
70% 69 108 286
50% 73 116 274
40% 73 116 303
30% 73 116 320
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 103 200
95% 65 103 283
90% 65 103 297
70% 65 103 316
50% 65 103 353
40% 65 104 368
30% 65 104 375
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 106 189
95% 69 106 265
90% 69 106 279
70% 69 106 298
50% 69 106 328
40% 69 106 355
30% 69 106 364
Entity #13: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 594 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39962
95% 1 1 29857
90% 1 1 28686
70% 1 1 25844
50% 1 1 22373
40% 1 1 19916
30% 1 1 17045
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 102 201
95% 65 103 280
90% 65 103 293
70% 65 103 314
50% 65 104 340
40% 69 112 316
30% 69 112 327
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 101 205
95% 65 101 291
90% 65 101 305
70% 65 101 322
50% 65 102 351
40% 65 102 377
30% 65 102 385
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 51 447
95% 33 51 648
90% 33 51 681
70% 33 52 725
50% 33 52 815
40% 33 52 834
30% 33 52 841
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 108 184
95% 70 108 257
90% 70 108 270
70% 70 108 289
50% 70 109 307
40% 70 109 334
30% 70 109 347
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 105 193
95% 69 105 274
90% 69 105 286
70% 69 105 305
50% 69 107 319
40% 69 107 349
30% 69 107 355
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 53 424
95% 34 53 617
90% 34 53 648
70% 34 53 699
50% 35 55 688
40% 35 55 713
30% 35 55 715
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 107 186
95% 69 108 258
90% 69 108 271
70% 69 108 290
50% 69 108 320
40% 69 108 350
30% 69 110 346
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 102 203
95% 65 102 288
90% 65 102 302
70% 65 102 319
50% 65 103 347
40% 65 103 372
30% 65 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.