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RNA Polymerase II-Bye1 complex
Sequence Clustering and Redundancy Reduction Results
4BXZ
Sequence Clusters for the Sequence Entities in PDB 4BXZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 101 202
95% 65 101 285
90% 65 101 299
70% 65 101 315
50% 65 102 345
40% 65 102 369
30% 65 102 376
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 107 178
95% 69 107 253
90% 69 107 265
70% 69 108 270
50% 73 116 274
40% 73 116 302
30% 73 116 317
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 103 197
95% 65 103 278
90% 65 103 292
70% 65 103 309
50% 65 103 350
40% 65 104 363
30% 65 104 371
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 106 185
95% 69 106 261
90% 69 106 275
70% 69 106 292
50% 69 106 325
40% 69 106 349
30% 69 106 357
Entity #13: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 594 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 39453
95% 1 1 29474
90% 1 1 28326
70% 1 1 25548
50% 1 1 22114
40% 1 1 19691
30% 1 1 16854
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 64 102 199
95% 65 103 274
90% 65 103 287
70% 65 103 306
50% 65 104 337
40% 69 112 313
30% 69 112 322
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 101 203
95% 65 101 287
90% 65 101 301
70% 65 101 317
50% 65 102 347
40% 65 102 372
30% 65 102 380
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 33 51 437
95% 33 51 636
90% 33 51 669
70% 33 52 715
50% 33 52 802
40% 33 52 823
30% 33 52 828
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 108 167
95% 70 108 239
90% 70 108 251
70% 70 108 274
50% 70 109 302
40% 70 109 325
30% 70 109 342
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 105 190
95% 69 105 269
90% 69 105 281
70% 69 105 297
50% 69 107 312
40% 69 107 339
30% 69 107 348
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 53 414
95% 34 53 602
90% 34 53 632
70% 34 53 688
50% 35 55 673
40% 35 55 701
30% 35 55 701
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 68 107 172
95% 69 108 240
90% 69 108 253
70% 69 108 275
50% 69 108 313
40% 69 108 340
30% 69 110 341
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 65 102 201
95% 65 102 284
90% 65 102 298
70% 65 102 314
50% 65 103 343
40% 65 103 367
30% 65 103 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.