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RNA Polymerase II-Bye1 complex
Sequence Clustering and Redundancy Reduction Results
4BXZ
Sequence Clusters for the Sequence Entities in PDB 4BXZ
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 108 198
95% 71 108 274
90% 71 108 288
70% 71 108 310
50% 71 109 330
40% 71 109 360
30% 71 109 366
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 114 184
95% 75 114 252
90% 75 114 262
70% 75 115 273
50% 79 123 270
40% 79 123 296
30% 79 123 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 110 194
95% 71 110 271
90% 71 110 284
70% 71 110 305
50% 71 110 334
40% 71 111 354
30% 71 111 363
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 113 187
95% 75 113 254
90% 75 113 265
70% 75 113 291
50% 75 113 318
40% 75 113 350
30% 75 113 357
Entity #13: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 594 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 41467
95% 1 1 30930
90% 1 1 29673
70% 1 1 26660
50% 1 1 23039
40% 1 1 20504
30% 1 1 17530
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 109 195
95% 71 110 267
90% 71 110 280
70% 71 110 302
50% 71 111 321
40% 75 119 308
30% 75 119 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 108 200
95% 71 108 277
90% 71 108 291
70% 71 108 311
50% 71 109 331
40% 71 109 364
30% 71 109 368
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 55 428
95% 36 55 617
90% 36 55 648
70% 36 56 689
50% 36 56 778
40% 36 56 805
30% 36 56 804
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 76 115 171
95% 76 115 240
90% 76 115 250
70% 76 115 279
50% 76 116 305
40% 76 116 335
30% 76 116 342
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 112 188
95% 75 112 256
90% 75 112 268
70% 75 112 294
50% 75 114 313
40% 75 114 341
30% 75 114 351
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 57 400
95% 37 57 589
90% 37 57 617
70% 37 57 668
50% 38 59 672
40% 38 59 703
30% 38 59 704
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 74 114 180
95% 75 115 242
90% 75 115 252
70% 75 115 282
50% 75 115 314
40% 75 115 342
30% 75 117 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 109 196
95% 71 109 273
90% 71 109 287
70% 71 109 309
50% 71 110 329
40% 71 110 359
30% 71 110 365
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.