Sequence Similarity Clusters for the Entities in PDB 4BXX

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 113 203
95 % 23 113 285
90 % 23 113 299
70 % 23 113 321
50 % 23 123 314
40 % 23 123 342
30 % 23 123 351
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 123 159
95 % 25 123 222
90 % 25 123 234
70 % 25 133 214
50 % 25 141 241
40 % 25 141 267
30 % 25 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 115 199
95 % 23 115 280
90 % 23 115 293
70 % 23 115 318
50 % 23 115 343
40 % 23 116 361
30 % 23 116 372
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 119 164
95 % 24 119 234
90 % 24 119 244
70 % 24 119 278
50 % 24 119 313
40 % 24 119 341
30 % 24 119 350
Entity #13 | Chains: N
5'-D(*GP*AP*GP*GP*TP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*AP*CP*CP*TP*GP *GP*TP*GP* BRUP*TP*GP*CP*TP*CP*TP*AP*AP*DC)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25029
95 % 2 3 20839
90 % 2 3 20186
70 % 2 3 18507
50 % 2 3 16132
40 % 2 3 14428
30 % 2 3 12353
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 114 200
95 % 23 115 277
90 % 23 115 290
70 % 23 115 316
50 % 23 125 308
40 % 23 133 292
30 % 23 136 300
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 110 207
95 % 22 110 294
90 % 22 110 308
70 % 22 110 329
50 % 22 111 346
40 % 22 111 379
30 % 22 111 384
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 59 412
95 % 12 59 610
90 % 12 59 647
70 % 12 60 678
50 % 12 62 745
40 % 12 62 773
30 % 12 62 781
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 124 152
95 % 26 124 212
90 % 26 124 224
70 % 26 124 257
50 % 26 125 293
40 % 26 134 291
30 % 26 134 311
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 118 166
95 % 24 118 239
90 % 24 118 250
70 % 24 118 282
50 % 24 129 278
40 % 24 129 305
30 % 24 129 326
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 62 381
95 % 13 62 561
90 % 13 62 591
70 % 13 62 638
50 % 14 73 550
40 % 14 73 585
30 % 14 73 592
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 123 158
95 % 25 124 216
90 % 25 124 227
70 % 25 124 261
50 % 25 124 304
40 % 25 124 326
30 % 25 135 306
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 114 202
95 % 23 114 284
90 % 23 114 298
70 % 23 114 320
50 % 23 115 339
40 % 23 115 365
30 % 23 118 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.