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Structures of RNA polymerase II complexes with Bye1, a chromatin- binding PHF3 DIDO homologue
Sequence Clustering and Redundancy Reduction Results
4BXX
Sequence Clusters for the Sequence Entities in PDB 4BXX
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 96 203
95% 22 96 288
90% 22 96 303
70% 22 96 321
50% 22 97 345
40% 22 97 366
30% 22 97 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 102 186
95% 24 102 265
90% 24 102 277
70% 24 103 286
50% 24 112 272
40% 24 112 301
30% 24 112 317
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 98 200
95% 22 98 284
90% 22 98 299
70% 22 98 315
50% 22 98 354
40% 22 99 362
30% 22 99 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 101 188
95% 24 101 270
90% 24 101 282
70% 24 101 300
50% 24 101 335
40% 24 101 357
30% 24 101 370
Entity #13: Chains: N - 5'-D(*GP*AP*GP*GP*TP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - 5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP)-3' rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - 5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*AP*CP*CP*TP*GP *GP*TP*GP* BRUP*TP*GP*CP*TP*CP*TP*AP*AP*DC)-3' dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: X - TRANSCRIPTION FACTOR BYE1 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 21484
95% 2 3 18021
90% 2 3 17493
70% 2 3 16121
50% 2 3 14141
40% 2 3 12689
30% 2 3 10915
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 97 201
95% 22 98 281
90% 22 98 296
70% 22 98 313
50% 22 99 339
40% 22 108 308
30% 22 108 326
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 96 205
95% 22 96 289
90% 22 96 304
70% 22 96 322
50% 22 97 348
40% 22 97 368
30% 22 97 383
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 447
95% 11 49 646
90% 11 49 679
70% 11 50 712
50% 11 50 789
40% 11 50 807
30% 11 50 809
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 25 103 180
95% 25 103 254
90% 25 103 266
70% 25 103 291
50% 25 104 309
40% 25 104 336
30% 25 104 348
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 100 190
95% 24 100 274
90% 24 100 286
70% 24 100 306
50% 24 102 325
40% 24 102 347
30% 24 102 360
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 51 417
95% 12 51 608
90% 12 51 639
70% 12 51 678
50% 13 53 648
40% 13 53 678
30% 13 53 679
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 23 102 185
95% 24 103 255
90% 24 103 268
70% 24 103 292
50% 24 103 326
40% 24 103 348
30% 24 105 344
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 97 202
95% 22 97 287
90% 22 97 302
70% 22 97 319
50% 22 98 343
40% 22 98 364
30% 22 98 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.