Sequence Similarity Clusters for the Entities in PDB 4BXX

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 109 204
95 % 22 109 285
90 % 22 109 298
70 % 22 109 321
50 % 22 111 331
40 % 22 111 363
30 % 22 111 372
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 119 161
95 % 24 119 223
90 % 24 119 234
70 % 24 121 258
50 % 24 129 257
40 % 24 129 278
30 % 24 129 295
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 111 198
95 % 22 111 281
90 % 22 111 294
70 % 22 111 317
50 % 22 111 341
40 % 22 112 362
30 % 22 112 370
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 117 165
95 % 24 117 233
90 % 24 117 243
70 % 24 117 272
50 % 24 117 309
40 % 24 117 335
30 % 24 117 345
Entity #13 | Chains: N
5'-D(*GP*AP*GP*GP*TP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*AP*CP*CP*TP*GP *GP*TP*GP* BRUP*TP*GP*CP*TP*CP*TP*AP*AP*DC)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24322
95 % 2 3 20288
90 % 2 3 19648
70 % 2 3 18016
50 % 2 3 15716
40 % 2 3 14054
30 % 2 3 12046
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 110 200
95 % 22 111 279
90 % 22 111 292
70 % 22 111 314
50 % 22 113 328
40 % 22 121 314
30 % 22 124 320
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 108 207
95 % 22 108 289
90 % 22 108 302
70 % 22 108 323
50 % 22 109 342
40 % 22 109 373
30 % 22 109 378
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 55 452
95 % 11 55 647
90 % 11 55 682
70 % 11 56 726
50 % 11 58 780
40 % 11 58 806
30 % 11 58 799
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 120 158
95 % 25 120 218
90 % 25 120 229
70 % 25 120 263
50 % 25 121 293
40 % 25 122 313
30 % 25 122 327
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 116 167
95 % 24 116 236
90 % 24 116 245
70 % 24 116 275
50 % 24 119 298
40 % 24 119 325
30 % 24 119 334
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 58 397
95 % 12 58 590
90 % 12 58 623
70 % 12 58 671
50 % 13 61 679
40 % 13 61 713
30 % 13 61 714
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 119 160
95 % 24 120 220
90 % 24 120 231
70 % 24 120 265
50 % 24 120 299
40 % 24 120 326
30 % 24 123 324
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 110 203
95 % 22 110 284
90 % 22 110 297
70 % 22 110 320
50 % 22 111 333
40 % 22 111 365
30 % 22 114 366

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.