Sequence Similarity Clusters for the Entities in PDB 4BXX

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 114 206
95 % 23 114 291
90 % 23 114 304
70 % 23 114 329
50 % 23 124 328
40 % 23 124 354
30 % 23 124 361
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 125 174
95 % 25 125 238
90 % 25 125 248
70 % 25 135 258
50 % 25 143 253
40 % 25 143 272
30 % 25 143 288
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 116 202
95 % 23 116 287
90 % 23 116 299
70 % 23 116 324
50 % 23 116 353
40 % 23 117 378
30 % 23 117 383
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 121 181
95 % 24 121 251
90 % 24 121 259
70 % 24 121 297
50 % 24 121 324
40 % 24 121 348
30 % 24 121 354
Entity #13 | Chains: N
5'-D(*GP*AP*GP*GP*TP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP*CP)-3' rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*AP*CP*CP*TP*GP *GP*TP*GP* BRUP*TP*GP*CP*TP*CP*TP*AP*AP*DC)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: X
TRANSCRIPTION FACTOR BYE1 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25878
95 % 2 3 21479
90 % 2 3 20791
70 % 2 3 19070
50 % 2 3 16600
40 % 2 3 14819
30 % 2 3 12674
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 115 203
95 % 23 116 284
90 % 23 116 295
70 % 23 116 321
50 % 23 126 322
40 % 23 134 310
30 % 23 137 311
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 111 209
95 % 22 111 299
90 % 22 111 314
70 % 22 111 335
50 % 22 112 360
40 % 22 112 396
30 % 22 112 396
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 60 443
95 % 12 60 650
90 % 12 60 689
70 % 12 61 712
50 % 12 63 749
40 % 12 63 786
30 % 12 63 788
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 126 169
95 % 26 126 234
90 % 26 126 244
70 % 26 126 274
50 % 26 127 307
40 % 26 136 303
30 % 26 136 319
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 120 184
95 % 24 120 254
90 % 24 120 262
70 % 24 120 299
50 % 24 131 293
40 % 24 131 316
30 % 24 131 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 63 395
95 % 13 63 585
90 % 13 63 616
70 % 13 63 659
50 % 14 74 570
40 % 14 74 606
30 % 14 74 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 125 173
95 % 25 126 235
90 % 25 126 245
70 % 25 126 277
50 % 25 126 314
40 % 25 126 336
30 % 25 137 314
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 115 205
95 % 23 115 290
90 % 23 115 303
70 % 23 115 328
50 % 23 116 350
40 % 23 116 382
30 % 23 119 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.