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Thermus thermophilus ribosome
Sequence Clustering and Redundancy Reduction Results
4BTD
Sequence Clusters for the Sequence Entities in PDB 4BTD
Entity #1: Chains: 0 - 50S RIBOSOMAL PROTEIN L27 protein, length: 84 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 136 95
95% 11 152 102
90% 11 152 110
70% 11 152 134
50% 21 288 67
40% 21 288 88
30% 21 288 108
Entity #10: Chains: 9 - 50S RIBOSOMAL PROTEIN L36 protein, length: 37 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 105 183
95% 8 105 261
90% 8 105 271
70% 8 131 206
50% 18 238 109
40% 18 238 132
30% 18 238 152
Entity #11: Chains: A - 23S RIBOSOMAL RNA rna, length: 2915 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: B - 5S RIBOSOMAL RNA rna, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #13: Chains: C - RIBOSOMAL PROTEIN L1 protein, length: 228 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 66 331
95% 13 90 300
90% 13 91 314
70% 13 91 337
50% 14 128 240
40% 14 128 269
30% 19 170 209
Entity #14: Chains: D - 50S RIBOSOMAL PROTEIN L2 protein, length: 275 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 65
95% 10 151 108
90% 10 151 116
70% 10 173 114
50% 20 283 79
40% 20 283 100
30% 20 283 122
Entity #15: Chains: E - 50S RIBOSOMAL PROTEIN L3 protein, length: 206 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 66
95% 10 151 110
90% 10 151 118
70% 10 151 142
50% 20 288 72
40% 20 288 92
30% 20 289 114
Entity #16: Chains: F - 50S RIBOSOMAL PROTEIN L4 protein, length: 210 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 135 102
95% 10 151 109
90% 10 151 117
70% 10 151 141
50% 10 178 150
40% 10 178 178
30% 21 290 109
Entity #17: Chains: G - 50S RIBOSOMAL PROTEIN L5 protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 136 97
95% 11 152 105
90% 11 152 113
70% 11 174 113
50% 22 288 68
40% 22 288 89
30% 22 288 110
Entity #18: Chains: H - 50S RIBOSOMAL PROTEIN L6 protein, length: 180 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 68
95% 10 151 111
90% 10 151 120
70% 10 151 143
50% 11 183 146
40% 21 292 85
30% 75 397 60
Entity #19: Chains: J - CHAIN J protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: 1 - 50S RIBOSOMAL PROTEIN L28 protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 126 114
95% 10 148 123
90% 10 148 131
70% 10 148 152
50% 10 148 198
40% 10 148 233
30% 10 148 250
Entity #20: Chains: K - CHAIN K protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #21: Chains: L - CHAIN L protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #22: Chains: N - 50S RIBOSOMAL PROTEIN L13 protein, length: 140 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 146 76
95% 10 146 125
90% 10 146 135
70% 10 146 157
50% 20 265 90
40% 20 265 114
30% 20 266 139
Entity #23: Chains: O - 50S RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 132 107
95% 10 151 114
90% 10 151 123
70% 10 173 115
50% 21 296 62
40% 21 297 81
30% 75 402 54
Entity #24: Chains: P - 50S RIBOSOMAL PROTEIN L15 protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 69
95% 10 151 112
90% 10 151 121
70% 10 151 144
50% 10 153 190
40% 20 285 95
30% 74 394 61
Entity #25: Chains: Q - 50S RIBOSOMAL PROTEIN L16 protein, length: 141 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 136 101
95% 10 152 106
90% 10 152 114
70% 10 177 110
50% 20 287 73
40% 20 287 94
30% 20 287 116
Entity #26: Chains: R - 50S RIBOSOMAL PROTEIN L17 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 156 53
95% 11 156 91
90% 11 156 99
70% 11 156 122
50% 21 287 64
40% 21 289 82
30% 21 291 102
Entity #27: Chains: S - 50S RIBOSOMAL PROTEIN L18 protein, length: 111 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 132 108
95% 10 132 157
90% 10 132 168
70% 10 132 200
50% 20 284 78
40% 20 284 99
30% 20 284 119
Entity #28: Chains: T - 50S RIBOSOMAL PROTEIN L19 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 135 103
95% 10 151 113
90% 10 151 122
70% 10 151 145
50% 10 151 194
40% 10 151 229
30% 10 151 244
Entity #29: Chains: U - 50S RIBOSOMAL PROTEIN L20 protein, length: 117 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 143 79
95% 10 151 115
90% 10 151 124
70% 10 151 146
50% 20 290 66
40% 20 291 84
30% 20 291 105
Entity #3: Chains: 2 - 50S RIBOSOMAL PROTEIN L29 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 139 96
95% 10 142 130
90% 10 142 143
70% 10 142 167
50% 10 142 212
40% 20 260 118
30% 20 284 120
Entity #30: Chains: V - 50S RIBOSOMAL PROTEIN L21 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 71
95% 10 151 117
90% 10 151 126
70% 10 151 148
50% 10 179 148
40% 20 285 96
30% 20 285 118
Entity #31: Chains: W - 50S RIBOSOMAL PROTEIN L22 protein, length: 113 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 158 60
95% 12 159 96
90% 12 159 104
70% 12 159 127
50% 22 270 87
40% 22 270 108
30% 22 272 130
Entity #32: Chains: X - 50S RIBOSOMAL PROTEIN L23 protein, length: 95 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 152 64
95% 10 152 107
90% 10 152 115
70% 10 152 139
50% 10 176 153
40% 20 291 87
30% 72 369 73
Entity #33: Chains: Y - 50S RIBOSOMAL PROTEIN L24 protein, length: 109 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 70
95% 10 151 116
90% 10 151 125
70% 10 151 147
50% 10 153 191
40% 20 265 115
30% 20 267 137
Entity #34: Chains: Z - 50S RIBOSOMAL PROTEIN L25 protein, length: 205 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 67
95% 11 152 104
90% 11 152 112
70% 11 152 137
50% 11 152 189
40% 11 152 227
30% 11 152 238
Entity #4: Chains: 3 - 50S RIBOSOMAL PROTEIN L30 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 158 58
95% 11 158 98
90% 11 158 106
70% 11 158 129
50% 11 158 175
40% 21 291 86
30% 21 291 107
Entity #5: Chains: 4 - 50S RIBOSOMAL PROTEIN L31 protein, length: 71 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 125 117
95% 10 125 171
90% 10 125 180
70% 10 125 216
50% 10 163 171
40% 10 163 205
30% 10 163 224
Entity #6: Chains: 5 - 50S RIBOSOMAL PROTEIN L32 protein, length: 59 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 135 104
95% 10 143 128
90% 10 143 140
70% 10 143 164
50% 10 175 160
40% 20 282 102
30% 20 282 124
Entity #7: Chains: 6 - 50S RIBOSOMAL PROTEIN L33 protein, length: 53 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 149 75
95% 10 149 122
90% 10 149 130
70% 10 149 151
50% 10 150 197
40% 20 280 104
30% 20 280 126
Entity #8: Chains: 7 - 50S RIBOSOMAL PROTEIN L34 protein, length: 48 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 73
95% 10 151 119
90% 10 151 128
70% 10 151 150
50% 10 151 195
40% 10 151 230
30% 10 151 245
Entity #9: Chains: 8 - 50S RIBOSOMAL PROTEIN L35 protein, length: 64 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 151 72
95% 10 151 118
90% 10 151 127
70% 10 151 149
50% 10 177 152
40% 10 177 182
30% 10 177 205
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.