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The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4
Sequence Clustering and Redundancy Reduction Results
4BPP
Sequence Clusters for the Sequence Entities in PDB 4BPP
Entity #1: Chains: 0 - TRANSLATION INITIATION FACTOR EIF-1A FAMILY PROTEIN protein, length: 211 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 15837
95% 3 4 13998
90% 3 4 13676
70% 3 4 12749
50% 3 4 11191
40% 3 4 10035
30% 3 4 8669
Entity #10: Chains: 9 - 40S RIBOSOMAL PROTEIN RPS31E protein, length: 189 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 16204
95% 3 4 14268
90% 3 4 13931
70% 3 6 8856
50% 3 6 8001
40% 3 6 7291
30% 3 6 6444
Entity #11: Chains: A - 18S RRNA rna, length: 1753 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: B - 40S RIBOSOMAL PROTEIN SA protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9241
95% 3 6 9168
90% 3 6 9072
70% 3 6 8641
50% 3 6 7822
40% 25 49 868
30% 25 49 862
Entity #13: Chains: C - 40S RIBOSOMAL PROTEIN RPS3E protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9227
95% 3 6 9153
90% 3 6 9057
70% 3 6 8625
50% 3 6 7809
40% 26 53 788
30% 26 54 772
Entity #14: Chains: D - 40S RIBOSOMAL PROTEIN RPS9E protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9637
95% 3 6 9485
90% 3 6 9364
70% 3 6 8896
50% 25 52 791
40% 25 54 772
30% 25 54 775
Entity #15: Chains: E - 40S RIBOSOMAL PROTEIN RPS2E protein, length: 296 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 8909
95% 3 6 8891
90% 3 6 8797
70% 3 6 8391
50% 3 6 7618
40% 3 6 6962
30% 3 6 6189
Entity #16: Chains: F - EIF1 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10245
95% 3 6 9990
90% 3 6 9847
70% 3 6 9331
50% 3 6 8419
40% 3 6 7670
30% 3 6 6771
Entity #17: Chains: G - 40S RIBOSOMAL PROTEIN RPS5E protein, length: 200 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 6652
95% 3 8 7003
90% 3 8 6944
70% 3 8 6688
50% 25 55 730
40% 26 58 709
30% 26 58 711
Entity #18: Chains: H - 40S RIBOSOMAL PROTEIN RPS22E protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10017
95% 3 6 9807
90% 3 6 9668
70% 25 54 680
50% 26 57 691
40% 26 57 718
30% 248 441 47
Entity #19: Chains: I - 40S RIBOSOMAL PROTEIN RPS16E protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9905
95% 3 6 9699
90% 3 6 9567
70% 3 6 9084
50% 25 54 754
40% 25 56 744
30% 243 432 56
Entity #2: Chains: 1 - 40S RIBOSOMAL PROTEIN RPS28E protein, length: 68 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10409
95% 3 6 10127
90% 3 6 9984
70% 3 6 9457
50% 26 54 756
40% 26 54 773
30% 26 54 776
Entity #20: Chains: J - 40S RIBOSOMAL PROTEIN RPS20E protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10107
95% 3 6 9877
90% 3 6 9740
70% 3 6 9232
50% 3 17 2798
40% 25 50 862
30% 25 50 857
Entity #21: Chains: K - 40S RIBOSOMAL PROTEIN RPS14E protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 8 6856
95% 3 8 7181
90% 3 8 7118
70% 25 56 648
50% 27 60 581
40% 245 436 38
30% 245 436 51
Entity #22: Chains: L - 40S RIBOSOMAL PROTEIN S12 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 10 4779
95% 3 10 5350
90% 3 10 5364
70% 25 58 619
50% 25 60 650
40% 25 60 680
30% 25 60 681
Entity #23: Chains: M - 40S RIBOSOMAL PROTEIN RPS18E protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9820
95% 3 6 9639
90% 3 6 9505
70% 3 6 9025
50% 25 54 753
40% 25 56 743
30% 243 434 54
Entity #24: Chains: N - 40S RIBOSOMAL PROTEIN RPS29E protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10462
95% 3 6 10169
90% 3 6 10027
70% 3 6 9492
50% 26 54 757
40% 26 54 774
30% 26 54 777
Entity #25: Chains: O - 40S RIBOSOMAL PROTEIN RPS13E protein, length: 153 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9832
95% 3 6 9649
90% 3 6 9517
70% 3 6 9038
50% 25 51 811
40% 25 53 792
30% 25 53 790
Entity #26: Chains: P - 40S RIBOSOMAL PROTEIN S24 protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9872
95% 3 6 9675
90% 3 6 9544
70% 3 6 9062
50% 3 6 8177
40% 3 6 7450
30% 3 6 6591
Entity #27: Chains: Q - 40S RIBOSOMAL PROTEIN RPS11E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9806
95% 3 6 9628
90% 3 6 9495
70% 3 6 9015
50% 25 52 793
40% 25 52 812
30% 25 52 813
Entity #28: Chains: R - 40S RIBOSOMAL PROTEIN RACK1 protein, length: 343 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 8646
95% 3 6 8692
90% 3 6 8604
70% 3 6 8220
50% 3 6 7493
40% 29 57 608
30% 29 57 604
Entity #29: Chains: S - 40S RIBOSOMAL PROTEIN RPS15E protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9914
95% 3 6 9707
90% 3 6 9575
70% 3 6 9088
50% 3 6 8201
40% 3 6 7471
30% 3 6 6610
Entity #3: Chains: 2 - 40S RIBOSOMAL PROTEIN S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9463
95% 3 6 9345
90% 3 6 9228
70% 3 6 8761
50% 25 48 872
40% 25 48 896
30% 25 48 877
Entity #30: Chains: T - 40S RIBOSOMAL PROTEIN RPS19E protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9821
95% 3 6 9640
90% 3 6 9506
70% 3 6 9026
50% 3 6 8144
40% 3 6 7422
30% 26 53 791
Entity #31: Chains: U - 40S RIBOSOMAL PROTEIN RPS12E protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10059
95% 3 6 9837
90% 3 6 9699
70% 3 6 9194
50% 3 6 8300
40% 3 6 7559
30% 3 16 2755
Entity #32: Chains: V - 40S RIBOSOMAL PROTEIN RPS17E protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10018
95% 3 6 9808
90% 3 6 9669
70% 3 6 9165
50% 25 51 813
40% 25 51 836
30% 25 51 838
Entity #33: Chains: W - 40S RIBOSOMAL PROTEIN RPS4E protein, length: 259 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9117
95% 3 6 9053
90% 3 6 8957
70% 3 6 8535
50% 25 49 845
40% 25 49 870
30% 25 51 828
Entity #34: Chains: X - 40S RIBOSOMAL PROTEIN RPS30E protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10359
95% 3 6 10086
90% 3 6 9941
70% 3 6 9416
50% 3 6 8499
40% 3 6 7741
30% 3 6 6836
Entity #35: Chains: Y - 40S RIBOSOMAL PROTEIN S6 protein, length: 293 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 8917
95% 3 6 8900
90% 3 6 8806
70% 3 6 8399
50% 3 6 7628
40% 3 7 6198
30% 3 7 5537
Entity #36: Chains: Z - 40S RIBOSOMAL PROTEIN RPS21E protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10290
95% 3 6 10021
90% 3 6 9878
70% 3 6 9358
50% 3 6 8445
40% 3 6 7695
30% 3 6 6794
Entity #4: Chains: 3 - 40S RIBOSOMAL PROTEIN RPS7E protein, length: 197 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9534
95% 3 6 9408
90% 3 6 9289
70% 3 6 8821
50% 3 6 7974
40% 3 6 7268
30% 25 48 878
Entity #5: Chains: 4 - 40S RIBOSOMAL PROTEIN S3A protein, length: 265 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9076
95% 3 6 9024
90% 3 6 8930
70% 3 6 8510
50% 25 46 913
40% 25 47 928
30% 25 47 908
Entity #6: Chains: 5 - 40S RIBOSOMAL PROTEIN RPS26E protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10116
95% 3 6 9887
90% 3 6 9751
70% 3 6 9243
50% 3 6 8344
40% 5 27 1694
30% 5 27 1633
Entity #7: Chains: 6 - 40S RIBOSOMAL PROTEIN S27 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 10354
95% 3 6 10083
90% 3 6 9937
70% 3 6 9411
50% 26 50 836
40% 26 50 864
30% 26 50 861
Entity #8: Chains: 7 - 40S RIBOSOMAL PROTEIN RPS10E protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9768
95% 3 6 9596
90% 3 6 9468
70% 3 6 8990
50% 3 6 8114
40% 3 6 7394
30% 3 7 5663
Entity #9: Chains: 8 - 40S RIBOSOMAL PROTEIN RPS25E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 6 9923
95% 3 6 9717
90% 3 6 9586
70% 3 6 9097
50% 3 6 8209
40% 3 6 7479
30% 3 6 6616
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.