POP-OUT | CLOSE
 
The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 3
Sequence Clustering and Redundancy Reduction Results
4BPO
Sequence Clusters for the Sequence Entities in PDB 4BPO
Entity #1: Chains: 0 - TRANSLATION INITIATION FACTOR EIF-1A FAMILY PROTEIN protein, length: 211 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 15669
95% 2 4 13858
90% 2 4 13544
70% 2 4 12633
50% 2 4 11093
40% 2 4 9945
30% 2 4 8601
Entity #10: Chains: 9 - 40S RIBOSOMAL PROTEIN RPS31E protein, length: 189 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 16035
95% 2 4 14126
90% 2 4 13796
70% 2 6 8773
50% 2 6 7929
40% 2 6 7229
30% 2 6 6399
Entity #11: Chains: A - 18S RRNA rna, length: 1753 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: B - 40S RIBOSOMAL PROTEIN SA protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9135
95% 2 6 9077
90% 2 6 8982
70% 2 6 8559
50% 2 6 7752
40% 4 29 1508
30% 4 29 1453
Entity #13: Chains: C - 40S RIBOSOMAL PROTEIN RPS3E protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9121
95% 2 6 9062
90% 2 6 8967
70% 2 6 8543
50% 2 6 7739
40% 5 33 1301
30% 5 34 1246
Entity #14: Chains: D - 40S RIBOSOMAL PROTEIN RPS9E protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9529
95% 2 6 9394
90% 2 6 9274
70% 2 6 8812
50% 4 32 1319
40% 4 34 1265
30% 4 34 1252
Entity #15: Chains: E - 40S RIBOSOMAL PROTEIN RPS2E protein, length: 296 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8802
95% 2 6 8797
90% 2 6 8705
70% 2 6 8307
50% 2 6 7546
40% 2 6 6900
30% 2 6 6147
Entity #16: Chains: F - EIF1 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10135
95% 2 6 9894
90% 2 6 9754
70% 2 6 9243
50% 2 6 8343
40% 2 6 7604
30% 2 6 6721
Entity #17: Chains: G - 40S RIBOSOMAL PROTEIN RPS5E protein, length: 200 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 6579
95% 2 8 6927
90% 2 8 6868
70% 2 8 6619
50% 4 35 1176
40% 5 38 1100
30% 5 38 1079
Entity #18: Chains: H - 40S RIBOSOMAL PROTEIN RPS22E protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9907
95% 2 6 9712
90% 2 6 9575
70% 4 34 1180
50% 5 37 1081
40% 5 37 1106
30% 218 408 50
Entity #19: Chains: I - 40S RIBOSOMAL PROTEIN RPS16E protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9795
95% 2 6 9604
90% 2 6 9473
70% 2 6 8994
50% 4 34 1238
40% 4 36 1185
30% 213 399 59
Entity #2: Chains: 1 - 40S RIBOSOMAL PROTEIN RPS28E protein, length: 68 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10298
95% 2 6 10030
90% 2 6 9891
70% 2 6 9368
50% 4 33 1279
40% 4 33 1316
30% 4 33 1295
Entity #20: Chains: J - 40S RIBOSOMAL PROTEIN RPS20E protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9998
95% 2 6 9782
90% 2 6 9647
70% 2 6 9143
50% 2 17 2759
40% 4 30 1480
30% 4 30 1427
Entity #21: Chains: K - 40S RIBOSOMAL PROTEIN RPS14E protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 6781
95% 2 8 7103
90% 2 8 7041
70% 4 36 1086
50% 6 40 865
40% 215 403 39
30% 215 403 53
Entity #22: Chains: L - 40S RIBOSOMAL PROTEIN S12 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 4712
95% 2 10 5279
90% 2 10 5292
70% 4 38 1013
50% 4 40 1025
40% 4 40 1054
30% 4 40 1032
Entity #23: Chains: M - 40S RIBOSOMAL PROTEIN RPS18E protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9710
95% 2 6 9546
90% 2 6 9414
70% 2 6 8939
50% 4 34 1237
40% 4 36 1183
30% 213 401 57
Entity #24: Chains: N - 40S RIBOSOMAL PROTEIN RPS29E protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10351
95% 2 6 10072
90% 2 6 9934
70% 2 6 9403
50% 4 33 1280
40% 4 33 1317
30% 4 33 1296
Entity #25: Chains: O - 40S RIBOSOMAL PROTEIN RPS13E protein, length: 153 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9723
95% 2 6 9556
90% 2 6 9426
70% 2 6 8952
50% 4 31 1366
40% 4 33 1309
30% 4 33 1289
Entity #26: Chains: P - 40S RIBOSOMAL PROTEIN S24 protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9763
95% 2 6 9582
90% 2 6 9452
70% 2 6 8975
50% 2 6 8103
40% 2 6 7386
30% 2 6 6543
Entity #27: Chains: Q - 40S RIBOSOMAL PROTEIN RPS11E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9697
95% 2 6 9536
90% 2 6 9405
70% 2 6 8931
50% 4 32 1323
40% 4 32 1361
30% 4 32 1327
Entity #28: Chains: R - 40S RIBOSOMAL PROTEIN RACK1 protein, length: 343 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8544
95% 2 6 8601
90% 2 6 8515
70% 2 6 8139
50% 2 6 7425
40% 7 36 904
30% 7 36 891
Entity #29: Chains: S - 40S RIBOSOMAL PROTEIN RPS15E protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9804
95% 2 6 9612
90% 2 6 9481
70% 2 6 8998
50% 2 6 8124
40% 2 6 7404
30% 2 6 6559
Entity #3: Chains: 2 - 40S RIBOSOMAL PROTEIN S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9359
95% 2 6 9255
90% 2 6 9139
70% 2 6 8679
50% 4 28 1539
40% 4 28 1572
30% 4 28 1518
Entity #30: Chains: T - 40S RIBOSOMAL PROTEIN RPS19E protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9711
95% 2 6 9547
90% 2 6 9415
70% 2 6 8940
50% 2 6 8071
40% 2 6 7358
30% 5 33 1290
Entity #31: Chains: U - 40S RIBOSOMAL PROTEIN RPS12E protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9950
95% 2 6 9742
90% 2 6 9606
70% 2 6 9105
50% 2 6 8224
40% 2 6 7494
30% 2 16 2721
Entity #32: Chains: V - 40S RIBOSOMAL PROTEIN RPS17E protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9908
95% 2 6 9713
90% 2 6 9576
70% 2 6 9076
50% 4 31 1370
40% 4 31 1414
30% 4 31 1374
Entity #33: Chains: W - 40S RIBOSOMAL PROTEIN RPS4E protein, length: 259 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9010
95% 2 6 8959
90% 2 6 8865
70% 2 6 8450
50% 4 29 1466
40% 4 29 1511
30% 4 31 1364
Entity #34: Chains: X - 40S RIBOSOMAL PROTEIN RPS30E protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10248
95% 2 6 9989
90% 2 6 9848
70% 2 6 9327
50% 2 6 8422
40% 2 6 7674
30% 2 6 6786
Entity #35: Chains: Y - 40S RIBOSOMAL PROTEIN S6 protein, length: 293 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8810
95% 2 6 8806
90% 2 6 8714
70% 2 6 8315
50% 2 6 7556
40% 2 7 6142
30% 2 7 5496
Entity #36: Chains: Z - 40S RIBOSOMAL PROTEIN RPS21E protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10180
95% 2 6 9925
90% 2 6 9785
70% 2 6 9270
50% 2 6 8369
40% 2 6 7629
30% 2 6 6744
Entity #4: Chains: 3 - 40S RIBOSOMAL PROTEIN RPS7E protein, length: 197 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9427
95% 2 6 9317
90% 2 6 9199
70% 2 6 8738
50% 2 6 7902
40% 2 6 7206
30% 4 28 1523
Entity #5: Chains: 4 - 40S RIBOSOMAL PROTEIN S3A protein, length: 265 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8971
95% 2 6 8931
90% 2 6 8839
70% 2 6 8426
50% 4 26 1659
40% 4 27 1638
30% 4 27 1584
Entity #6: Chains: 5 - 40S RIBOSOMAL PROTEIN RPS26E protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10008
95% 2 6 9793
90% 2 6 9659
70% 2 6 9155
50% 2 6 8268
40% 4 27 1655
30% 4 27 1602
Entity #7: Chains: 6 - 40S RIBOSOMAL PROTEIN S27 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10243
95% 2 6 9986
90% 2 6 9844
70% 2 6 9322
50% 4 29 1487
40% 4 29 1530
30% 4 29 1476
Entity #8: Chains: 7 - 40S RIBOSOMAL PROTEIN RPS10E protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9659
95% 2 6 9504
90% 2 6 9378
70% 2 6 8906
50% 2 6 8042
40% 2 6 7331
30% 2 7 5621
Entity #9: Chains: 8 - 40S RIBOSOMAL PROTEIN RPS25E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9813
95% 2 6 9622
90% 2 6 9492
70% 2 6 9007
50% 2 6 8132
40% 2 6 7412
30% 2 6 6565
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.