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The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 3
Sequence Clustering and Redundancy Reduction Results
4BPO
Sequence Clusters for the Sequence Entities in PDB 4BPO
Entity #1: Chains: 0 - TRANSLATION INITIATION FACTOR EIF-1A FAMILY PROTEIN protein, length: 211 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 15592
95% 2 4 13791
90% 2 4 13480
70% 2 4 12581
50% 2 4 11050
40% 2 4 9908
30% 2 4 8570
Entity #10: Chains: 9 - 40S RIBOSOMAL PROTEIN RPS31E protein, length: 189 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 15956
95% 2 4 14058
90% 2 4 13731
70% 2 6 8733
50% 2 6 7892
40% 2 6 7198
30% 2 6 6370
Entity #11: Chains: A - 18S RRNA rna, length: 1753 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: B - 40S RIBOSOMAL PROTEIN SA protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9100
95% 2 6 9043
90% 2 6 8948
70% 2 6 8521
50% 2 6 7716
40% 4 29 1502
30% 4 29 1447
Entity #13: Chains: C - 40S RIBOSOMAL PROTEIN RPS3E protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9086
95% 2 6 9028
90% 2 6 8933
70% 2 6 8505
50% 2 6 7703
40% 5 33 1300
30% 5 34 1242
Entity #14: Chains: D - 40S RIBOSOMAL PROTEIN RPS9E protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9489
95% 2 6 9355
90% 2 6 9236
70% 2 6 8772
50% 4 32 1317
40% 4 34 1263
30% 4 34 1248
Entity #15: Chains: E - 40S RIBOSOMAL PROTEIN RPS2E protein, length: 296 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8768
95% 2 6 8764
90% 2 6 8672
70% 2 6 8271
50% 2 6 7511
40% 2 6 6871
30% 2 6 6118
Entity #16: Chains: F - EIF1 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10091
95% 2 6 9849
90% 2 6 9710
70% 2 6 9199
50% 2 6 8304
40% 2 6 7571
30% 2 6 6689
Entity #17: Chains: G - 40S RIBOSOMAL PROTEIN RPS5E protein, length: 200 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 6544
95% 2 8 6890
90% 2 8 6837
70% 2 8 6589
50% 4 35 1175
40% 5 38 1097
30% 5 38 1076
Entity #18: Chains: H - 40S RIBOSOMAL PROTEIN RPS22E protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9864
95% 2 6 9669
90% 2 6 9533
70% 4 34 1179
50% 5 37 1080
40% 5 37 1104
30% 218 408 50
Entity #19: Chains: I - 40S RIBOSOMAL PROTEIN RPS16E protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9755
95% 2 6 9564
90% 2 6 9434
70% 2 6 8953
50% 4 34 1236
40% 4 36 1183
30% 213 399 58
Entity #2: Chains: 1 - 40S RIBOSOMAL PROTEIN RPS28E protein, length: 68 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10252
95% 2 6 9984
90% 2 6 9847
70% 2 6 9325
50% 4 33 1278
40% 4 33 1315
30% 4 33 1292
Entity #20: Chains: J - 40S RIBOSOMAL PROTEIN RPS20E protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9955
95% 2 6 9739
90% 2 6 9605
70% 2 6 9100
50% 2 17 2746
40% 4 30 1475
30% 4 30 1420
Entity #21: Chains: K - 40S RIBOSOMAL PROTEIN RPS14E protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 8 6746
95% 2 8 7067
90% 2 8 7011
70% 4 36 1084
50% 6 40 861
40% 215 403 39
30% 215 403 53
Entity #22: Chains: L - 40S RIBOSOMAL PROTEIN S12 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 10 4688
95% 2 10 5254
90% 2 10 5268
70% 4 38 1011
50% 4 40 1024
40% 4 40 1052
30% 4 40 1029
Entity #23: Chains: M - 40S RIBOSOMAL PROTEIN RPS18E protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9669
95% 2 6 9506
90% 2 6 9375
70% 2 6 8898
50% 4 34 1235
40% 4 36 1181
30% 213 401 55
Entity #24: Chains: N - 40S RIBOSOMAL PROTEIN RPS29E protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10305
95% 2 6 10026
90% 2 6 9890
70% 2 6 9360
50% 4 33 1279
40% 4 33 1316
30% 4 33 1293
Entity #25: Chains: O - 40S RIBOSOMAL PROTEIN RPS13E protein, length: 153 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9682
95% 2 6 9516
90% 2 6 9387
70% 2 6 8911
50% 4 31 1364
40% 4 33 1308
30% 4 33 1286
Entity #26: Chains: P - 40S RIBOSOMAL PROTEIN S24 protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9722
95% 2 6 9542
90% 2 6 9413
70% 2 6 8934
50% 2 6 8065
40% 2 6 7354
30% 2 6 6513
Entity #27: Chains: Q - 40S RIBOSOMAL PROTEIN RPS11E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9656
95% 2 6 9496
90% 2 6 9366
70% 2 6 8890
50% 4 32 1321
40% 4 32 1359
30% 4 32 1323
Entity #28: Chains: R - 40S RIBOSOMAL PROTEIN RACK1 protein, length: 343 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8509
95% 2 6 8567
90% 2 6 8482
70% 2 6 8103
50% 2 6 7390
40% 7 36 901
30% 7 36 888
Entity #29: Chains: S - 40S RIBOSOMAL PROTEIN RPS15E protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9762
95% 2 6 9571
90% 2 6 9441
70% 2 6 8956
50% 2 6 8085
40% 2 6 7371
30% 2 6 6527
Entity #3: Chains: 2 - 40S RIBOSOMAL PROTEIN S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9322
95% 2 6 9218
90% 2 6 9103
70% 2 6 8640
50% 4 28 1535
40% 4 28 1566
30% 4 28 1512
Entity #30: Chains: T - 40S RIBOSOMAL PROTEIN RPS19E protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9670
95% 2 6 9507
90% 2 6 9376
70% 2 6 8899
50% 2 6 8033
40% 2 6 7326
30% 5 33 1287
Entity #31: Chains: U - 40S RIBOSOMAL PROTEIN RPS12E protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9907
95% 2 6 9699
90% 2 6 9564
70% 2 6 9062
50% 2 6 8184
40% 2 6 7460
30% 2 16 2708
Entity #32: Chains: V - 40S RIBOSOMAL PROTEIN RPS17E protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9865
95% 2 6 9670
90% 2 6 9534
70% 2 6 9033
50% 4 31 1367
40% 4 31 1410
30% 4 31 1369
Entity #33: Chains: W - 40S RIBOSOMAL PROTEIN RPS4E protein, length: 259 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8976
95% 2 6 8926
90% 2 6 8832
70% 2 6 8414
50% 4 29 1463
40% 4 29 1505
30% 4 31 1360
Entity #34: Chains: X - 40S RIBOSOMAL PROTEIN RPS30E protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10203
95% 2 6 9943
90% 2 6 9804
70% 2 6 9283
50% 2 6 8383
40% 2 6 7641
30% 2 6 6754
Entity #35: Chains: Y - 40S RIBOSOMAL PROTEIN S6 protein, length: 293 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8777
95% 2 6 8773
90% 2 6 8681
70% 2 6 8279
50% 2 6 7521
40% 2 7 6114
30% 2 7 5471
Entity #36: Chains: Z - 40S RIBOSOMAL PROTEIN RPS21E protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10135
95% 2 6 9879
90% 2 6 9741
70% 2 6 9226
50% 2 6 8330
40% 2 6 7596
30% 2 6 6712
Entity #4: Chains: 3 - 40S RIBOSOMAL PROTEIN RPS7E protein, length: 197 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9389
95% 2 6 9280
90% 2 6 9163
70% 2 6 8699
50% 2 6 7865
40% 2 6 7175
30% 4 28 1517
Entity #5: Chains: 4 - 40S RIBOSOMAL PROTEIN S3A protein, length: 265 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 8937
95% 2 6 8898
90% 2 6 8806
70% 2 6 8390
50% 4 26 1654
40% 4 27 1633
30% 4 27 1579
Entity #6: Chains: 5 - 40S RIBOSOMAL PROTEIN RPS26E protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9965
95% 2 6 9750
90% 2 6 9617
70% 2 6 9112
50% 2 6 8228
40% 4 27 1649
30% 4 27 1597
Entity #7: Chains: 6 - 40S RIBOSOMAL PROTEIN S27 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 10198
95% 2 6 9940
90% 2 6 9800
70% 2 6 9278
50% 4 29 1483
40% 4 29 1524
30% 4 29 1470
Entity #8: Chains: 7 - 40S RIBOSOMAL PROTEIN RPS10E protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9618
95% 2 6 9464
90% 2 6 9339
70% 2 6 8865
50% 2 6 8004
40% 2 6 7299
30% 2 7 5595
Entity #9: Chains: 8 - 40S RIBOSOMAL PROTEIN RPS25E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 6 9771
95% 2 6 9581
90% 2 6 9452
70% 2 6 8965
50% 2 6 8093
40% 2 6 7379
30% 2 6 6533
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.