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The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 1
Sequence Clustering and Redundancy Reduction Results
4BPE
Sequence Clusters for the Sequence Entities in PDB 4BPE
Entity #1: Chains: 0 - TRANSLATION INITIATION FACTOR EIF-1A FAMILY PROTEIN protein, length: 211 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 15647
95% 4 4 13840
90% 4 4 13526
70% 4 4 12618
50% 4 4 11081
40% 4 4 9932
30% 4 4 8591
Entity #10: Chains: 9 - 40S RIBOSOMAL PROTEIN RPS31E protein, length: 189 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 16014
95% 4 4 14109
90% 4 4 13778
70% 4 6 8765
50% 4 6 7922
40% 4 6 7221
30% 4 6 6391
Entity #11: Chains: A - 18S RRNA rna, length: 1753 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #12: Chains: B - 40S RIBOSOMAL PROTEIN SA protein, length: 241 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9124
95% 4 6 9067
90% 4 6 8972
70% 4 6 8550
50% 4 6 7744
40% 6 29 1508
30% 6 29 1452
Entity #13: Chains: C - 40S RIBOSOMAL PROTEIN RPS3E protein, length: 243 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9110
95% 4 6 9052
90% 4 6 8957
70% 4 6 8534
50% 4 6 7731
40% 7 33 1301
30% 7 34 1245
Entity #14: Chains: D - 40S RIBOSOMAL PROTEIN RPS9E protein, length: 181 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9517
95% 4 6 9383
90% 4 6 9264
70% 4 6 8804
50% 6 32 1319
40% 6 34 1265
30% 6 34 1251
Entity #15: Chains: E - 40S RIBOSOMAL PROTEIN RPS2E protein, length: 296 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 8790
95% 4 6 8787
90% 4 6 8695
70% 4 6 8298
50% 4 6 7538
40% 4 6 6891
30% 4 6 6140
Entity #16: Chains: F - EIF1 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 10123
95% 4 6 9882
90% 4 6 9743
70% 4 6 9234
50% 4 6 8336
40% 4 6 7596
30% 4 6 6713
Entity #17: Chains: G - 40S RIBOSOMAL PROTEIN RPS5E protein, length: 200 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 8 6566
95% 4 8 6916
90% 4 8 6858
70% 4 8 6610
50% 6 35 1176
40% 7 38 1098
30% 7 38 1078
Entity #18: Chains: H - 40S RIBOSOMAL PROTEIN RPS22E protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9895
95% 4 6 9701
90% 4 6 9565
70% 6 34 1180
50% 7 37 1081
40% 7 37 1105
30% 220 408 50
Entity #19: Chains: I - 40S RIBOSOMAL PROTEIN RPS16E protein, length: 145 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9783
95% 4 6 9593
90% 4 6 9463
70% 4 6 8986
50% 6 34 1238
40% 6 36 1184
30% 215 399 59
Entity #2: Chains: 1 - 40S RIBOSOMAL PROTEIN RPS28E protein, length: 68 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 10286
95% 4 6 10018
90% 4 6 9880
70% 4 6 9359
50% 6 33 1279
40% 6 33 1316
30% 6 33 1294
Entity #20: Chains: J - 40S RIBOSOMAL PROTEIN RPS20E protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9986
95% 4 6 9771
90% 4 6 9637
70% 4 6 9135
50% 4 17 2756
40% 6 30 1480
30% 6 30 1426
Entity #21: Chains: K - 40S RIBOSOMAL PROTEIN RPS14E protein, length: 151 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 8 6767
95% 4 8 7091
90% 4 8 7030
70% 6 36 1086
50% 8 40 864
40% 217 403 39
30% 217 403 53
Entity #22: Chains: L - 40S RIBOSOMAL PROTEIN S12 protein, length: 142 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 10 4704
95% 4 10 5271
90% 4 10 5284
70% 6 38 1013
50% 6 40 1025
40% 6 40 1053
30% 6 40 1032
Entity #23: Chains: M - 40S RIBOSOMAL PROTEIN RPS18E protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9698
95% 4 6 9535
90% 4 6 9404
70% 4 6 8931
50% 6 34 1237
40% 6 36 1182
30% 215 401 57
Entity #24: Chains: N - 40S RIBOSOMAL PROTEIN RPS29E protein, length: 55 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 10340
95% 4 6 10061
90% 4 6 9924
70% 4 6 9395
50% 6 33 1280
40% 6 33 1317
30% 6 33 1295
Entity #25: Chains: O - 40S RIBOSOMAL PROTEIN RPS13E protein, length: 153 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9711
95% 4 6 9545
90% 4 6 9416
70% 4 6 8944
50% 6 31 1367
40% 6 33 1309
30% 6 33 1288
Entity #26: Chains: P - 40S RIBOSOMAL PROTEIN S24 protein, length: 149 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9751
95% 4 6 9571
90% 4 6 9442
70% 4 6 8967
50% 4 6 8096
40% 4 6 7378
30% 4 6 6535
Entity #27: Chains: Q - 40S RIBOSOMAL PROTEIN RPS11E protein, length: 157 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9685
95% 4 6 9525
90% 4 6 9395
70% 4 6 8923
50% 6 32 1323
40% 6 32 1361
30% 6 32 1326
Entity #28: Chains: R - 40S RIBOSOMAL PROTEIN RACK1 protein, length: 343 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 8532
95% 4 6 8591
90% 4 6 8505
70% 4 6 8130
50% 4 6 7417
40% 9 36 904
30% 9 36 891
Entity #29: Chains: S - 40S RIBOSOMAL PROTEIN RPS15E protein, length: 144 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9792
95% 4 6 9601
90% 4 6 9471
70% 4 6 8990
50% 4 6 8117
40% 4 6 7396
30% 4 6 6551
Entity #3: Chains: 2 - 40S RIBOSOMAL PROTEIN S8 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9346
95% 4 6 9243
90% 4 6 9128
70% 4 6 8670
50% 6 28 1539
40% 6 28 1572
30% 6 28 1517
Entity #30: Chains: T - 40S RIBOSOMAL PROTEIN RPS19E protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9699
95% 4 6 9536
90% 4 6 9405
70% 4 6 8932
50% 4 6 8064
40% 4 6 7350
30% 7 33 1289
Entity #31: Chains: U - 40S RIBOSOMAL PROTEIN RPS12E protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9938
95% 4 6 9731
90% 4 6 9596
70% 4 6 9097
50% 4 6 8217
40% 4 6 7486
30% 4 16 2717
Entity #32: Chains: V - 40S RIBOSOMAL PROTEIN RPS17E protein, length: 130 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9896
95% 4 6 9702
90% 4 6 9566
70% 4 6 9068
50% 6 31 1371
40% 6 31 1414
30% 6 31 1373
Entity #33: Chains: W - 40S RIBOSOMAL PROTEIN RPS4E protein, length: 259 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 8999
95% 4 6 8949
90% 4 6 8855
70% 4 6 8441
50% 6 29 1467
40% 6 29 1511
30% 6 31 1363
Entity #34: Chains: X - 40S RIBOSOMAL PROTEIN RPS30E protein, length: 80 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 10236
95% 4 6 9977
90% 4 6 9837
70% 4 6 9318
50% 4 6 8415
40% 4 6 7666
30% 4 6 6778
Entity #35: Chains: Y - 40S RIBOSOMAL PROTEIN S6 protein, length: 293 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 8799
95% 4 6 8796
90% 4 6 8704
70% 4 6 8306
50% 4 6 7548
40% 4 7 6131
30% 4 7 5489
Entity #36: Chains: Z - 40S RIBOSOMAL PROTEIN RPS21E protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 10168
95% 4 6 9913
90% 4 6 9774
70% 4 6 9261
50% 4 6 8362
40% 4 6 7621
30% 4 6 6736
Entity #4: Chains: 3 - 40S RIBOSOMAL PROTEIN RPS7E protein, length: 197 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9414
95% 4 6 9305
90% 4 6 9188
70% 4 6 8729
50% 4 6 7894
40% 4 6 7197
30% 6 28 1522
Entity #5: Chains: 4 - 40S RIBOSOMAL PROTEIN S3A protein, length: 265 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 8960
95% 4 6 8921
90% 4 6 8829
70% 4 6 8417
50% 6 26 1658
40% 6 27 1638
30% 6 27 1583
Entity #6: Chains: 5 - 40S RIBOSOMAL PROTEIN RPS26E protein, length: 119 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9996
95% 4 6 9782
90% 4 6 9649
70% 4 6 9147
50% 4 6 8261
40% 6 27 1655
30% 6 27 1601
Entity #7: Chains: 6 - 40S RIBOSOMAL PROTEIN S27 protein, length: 81 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 10231
95% 4 6 9974
90% 4 6 9833
70% 4 6 9313
50% 6 29 1487
40% 6 29 1530
30% 6 29 1475
Entity #8: Chains: 7 - 40S RIBOSOMAL PROTEIN RPS10E protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9647
95% 4 6 9493
90% 4 6 9368
70% 4 6 8898
50% 4 6 8035
40% 4 6 7323
30% 4 7 5615
Entity #9: Chains: 8 - 40S RIBOSOMAL PROTEIN RPS25E protein, length: 143 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 6 9801
95% 4 6 9611
90% 4 6 9482
70% 4 6 8999
50% 4 6 8125
40% 4 6 7404
30% 4 6 6557
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.