Sequence Similarity Clusters for the Entities in PDB 4BGZ

Entity #1 | Chains: A,C,E
HEMAGGLUTININ protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 8364
95 % 41 66 158 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 45 73 160
70 % 51 87 161
50 % 94 176 80
40 % 191 345 16
30 % 194 353 29
Entity #2 | Chains: B,D,F
HAEMAGGLUTININ HA1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 42 478
95 % 46 77 149 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 1.1
PDBFlex
90 % 51 88 140
70 % 92 176 32
50 % 189 337 11
40 % 193 347 17
30 % 197 353 31

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures