Sequence Similarity Clusters for the Entities in PDB 4BGZ

Entity #1 | Chains: A,C,E
HEMAGGLUTININ protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7364
95 % 41 65 160 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.9
PDBFlex
90 % 45 72 160
70 % 51 86 167
50 % 94 175 78
40 % 191 340 17
30 % 194 348 27
Entity #2 | Chains: B,D,F
HAEMAGGLUTININ HA1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 1112
95 % 46 76 150 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 1.1
PDBFlex
90 % 51 87 143
70 % 92 175 30
50 % 189 335 10
40 % 193 345 16
30 % 193 345 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures