Sequence Similarity Clusters for the Entities in PDB 4BGZ

Entity #1 | Chains: A,C,E
HEMAGGLUTININ protein, length: 327 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7244
95 % 40 64 158 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.9
PDBFlex
90 % 44 71 159
70 % 50 85 164
50 % 93 174 79
40 % 181 330 17
30 % 184 338 27
Entity #2 | Chains: B,D,F
HAEMAGGLUTININ HA1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 1096
95 % 45 75 150 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 1.1
PDBFlex
90 % 50 86 142
70 % 91 174 31
50 % 179 325 10
40 % 183 335 16
30 % 183 335 28

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures