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An Information Portal to 110790 Biological Macromolecular Structures

Structure of an initially transcribing RNA polymerase II-TFIIB complex
Sequence Clustering and Redundancy Reduction Results
4BBS
Sequence Clusters for the Sequence Entities in PDB 4BBS
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 103 205
95% 39 103 288
90% 39 103 301
70% 39 103 323
50% 39 104 347
40% 39 104 378
30% 39 104 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 109 189
95% 41 109 263
90% 41 109 276
70% 41 110 290
50% 41 118 274
40% 41 118 310
30% 41 118 320
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 105 201
95% 39 105 286
90% 39 105 296
70% 39 105 319
50% 39 105 350
40% 39 106 368
30% 39 106 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 108 191
95% 41 108 266
90% 41 108 280
70% 41 108 300
50% 41 108 328
40% 41 108 362
30% 41 108 365
Entity #13: Chains: M - TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 11720
95% 2 5 11218
90% 2 5 11056
70% 2 5 10444
50% 2 5 9393
40% 2 5 8569
30% 2 5 7518
Entity #14: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: P - 5'-R(*AP*UP*AP*UP*CP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: T - 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3' dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 104 202
95% 39 105 284
90% 39 105 295
70% 39 105 318
50% 39 106 334
40% 39 114 320
30% 39 114 329
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 103 206
95% 39 103 289
90% 39 103 302
70% 39 103 324
50% 39 104 349
40% 39 104 380
30% 39 104 384
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 51 464
95% 19 51 673
90% 19 51 708
70% 19 52 753
50% 19 52 843
40% 19 52 864
30% 19 52 864
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 110 184
95% 42 110 256
90% 42 110 268
70% 42 110 292
50% 42 111 310
40% 42 111 344
30% 42 111 353
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 107 192
95% 41 107 272
90% 41 107 285
70% 41 107 305
50% 41 109 317
40% 41 109 349
30% 41 109 358
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 53 437
95% 20 53 638
90% 20 53 670
70% 20 53 721
50% 21 55 712
40% 21 55 740
30% 21 55 741
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 109 188
95% 41 110 257
90% 41 110 269
70% 41 110 293
50% 41 110 318
40% 41 110 350
30% 41 112 350
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 104 204
95% 39 104 287
90% 39 104 300
70% 39 104 322
50% 39 105 343
40% 39 105 375
30% 39 105 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.