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An Information Portal to 111558 Biological Macromolecular Structures

Structure of an initially transcribing RNA polymerase II-TFIIB complex
Sequence Clustering and Redundancy Reduction Results
4BBS
Sequence Clusters for the Sequence Entities in PDB 4BBS
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 108 198
95% 39 108 273
90% 39 108 287
70% 39 108 308
50% 39 109 329
40% 39 109 359
30% 39 109 365
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 114 183
95% 41 114 251
90% 41 114 261
70% 41 115 272
50% 41 123 270
40% 41 123 296
30% 41 123 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 110 194
95% 39 110 270
90% 39 110 283
70% 39 110 304
50% 39 110 333
40% 39 111 353
30% 39 111 362
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 113 187
95% 41 113 253
90% 41 113 264
70% 41 113 290
50% 41 113 317
40% 41 113 349
30% 41 113 356
Entity #13: Chains: M - TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 11835
95% 2 5 11320
90% 2 5 11158
70% 2 5 10539
50% 2 5 9482
40% 2 5 8649
30% 2 5 7585
Entity #14: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: P - 5'-R(*AP*UP*AP*UP*CP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: T - 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3' dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 109 195
95% 39 110 265
90% 39 110 278
70% 39 110 301
50% 39 111 320
40% 39 119 308
30% 39 119 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 108 200
95% 39 108 277
90% 39 108 291
70% 39 108 310
50% 39 109 330
40% 39 109 363
30% 39 109 367
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 55 430
95% 19 55 619
90% 19 55 651
70% 19 56 689
50% 19 56 776
40% 19 56 803
30% 19 56 804
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 42 115 170
95% 42 115 239
90% 42 115 249
70% 42 115 277
50% 42 116 305
40% 42 116 335
30% 42 116 342
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 112 188
95% 41 112 255
90% 41 112 267
70% 41 112 293
50% 41 114 312
40% 41 114 340
30% 41 114 350
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 57 402
95% 20 57 589
90% 20 57 619
70% 20 57 670
50% 21 59 672
40% 21 59 703
30% 21 59 703
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 114 179
95% 41 115 241
90% 41 115 251
70% 41 115 280
50% 41 115 313
40% 41 115 341
30% 41 117 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 109 196
95% 39 109 272
90% 39 109 286
70% 39 109 307
50% 39 110 328
40% 39 110 358
30% 39 110 364
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.