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An Information Portal to 105906 Biological Macromolecular Structures

Structure of an initially transcribing RNA polymerase II-TFIIB complex
Sequence Clustering and Redundancy Reduction Results
4BBS
Sequence Clusters for the Sequence Entities in PDB 4BBS
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 96 209
95% 38 96 294
90% 38 96 311
70% 38 96 328
50% 38 97 355
40% 38 97 377
30% 38 97 388
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 102 191
95% 40 102 269
90% 40 102 283
70% 40 103 295
50% 40 111 277
40% 40 111 306
30% 40 111 322
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 98 205
95% 38 98 289
90% 38 98 306
70% 38 98 322
50% 38 98 362
40% 38 99 373
30% 38 99 383
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 101 193
95% 40 101 274
90% 40 101 288
70% 40 101 305
50% 40 101 343
40% 40 101 367
30% 40 101 378
Entity #13: Chains: M - TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 19878
95% 2 3 16934
90% 2 3 16508
70% 2 3 15302
50% 2 3 13433
40% 2 3 12078
30% 2 3 10433
Entity #14: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: P - 5'-R(*AP*UP*AP*UP*CP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: T - 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3' dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 97 206
95% 38 98 286
90% 38 98 302
70% 38 98 320
50% 38 99 348
40% 38 107 316
30% 38 107 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 96 211
95% 38 96 296
90% 38 96 313
70% 38 96 329
50% 38 97 358
40% 38 97 380
30% 38 97 390
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 49 466
95% 19 49 666
90% 19 49 701
70% 19 50 742
50% 19 50 826
40% 19 50 852
30% 19 50 850
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 103 186
95% 41 103 263
90% 41 103 276
70% 41 103 298
50% 41 104 324
40% 41 104 348
30% 41 104 356
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 100 195
95% 40 100 279
90% 40 100 293
70% 40 100 312
50% 40 102 334
40% 40 102 360
30% 40 102 370
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 51 424
95% 20 51 618
90% 20 51 652
70% 20 51 711
50% 21 53 691
40% 21 53 717
30% 21 53 717
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 102 189
95% 40 103 265
90% 40 103 278
70% 40 103 299
50% 40 103 335
40% 40 103 361
30% 40 105 351
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 97 207
95% 38 97 292
90% 38 97 309
70% 38 97 325
50% 38 98 354
40% 38 98 376
30% 38 98 387
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.