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Structure of an initially transcribing RNA polymerase II-TFIIB complex
Sequence Clustering and Redundancy Reduction Results
4BBS
Sequence Clusters for the Sequence Entities in PDB 4BBS
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 101 208
95% 38 101 292
90% 38 101 310
70% 38 101 329
50% 38 102 352
40% 38 102 381
30% 38 102 387
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 107 189
95% 40 107 269
90% 40 107 282
70% 40 108 293
50% 40 116 277
40% 40 116 310
30% 40 116 322
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 103 202
95% 38 103 287
90% 38 103 303
70% 38 103 321
50% 38 103 356
40% 38 104 376
30% 38 104 382
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 106 192
95% 40 106 271
90% 40 106 285
70% 40 106 303
50% 40 106 332
40% 40 106 365
30% 40 106 371
Entity #13: Chains: M - TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 11611
95% 2 5 11117
90% 2 5 10961
70% 2 5 10366
50% 2 5 9323
40% 2 5 8498
30% 2 5 7457
Entity #14: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: P - 5'-R(*AP*UP*AP*UP*CP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: T - 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3' dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 102 205
95% 38 103 284
90% 38 103 298
70% 38 103 318
50% 38 104 345
40% 38 112 324
30% 38 112 332
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 101 209
95% 38 101 293
90% 38 101 311
70% 38 101 330
50% 38 102 354
40% 38 102 384
30% 38 102 390
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 51 457
95% 19 51 664
90% 19 51 696
70% 19 52 744
50% 19 52 834
40% 19 52 856
30% 19 52 859
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 108 187
95% 41 108 262
90% 41 108 276
70% 41 108 296
50% 41 109 314
40% 41 109 344
30% 41 109 353
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 105 196
95% 40 105 279
90% 40 105 291
70% 40 105 310
50% 40 107 324
40% 40 107 357
30% 40 107 360
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 53 432
95% 20 53 630
90% 20 53 660
70% 20 53 711
50% 21 55 708
40% 21 55 738
30% 21 55 739
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 107 188
95% 40 108 263
90% 40 108 277
70% 40 108 297
50% 40 108 325
40% 40 108 358
30% 40 110 350
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 102 207
95% 38 102 291
90% 38 102 309
70% 38 102 327
50% 38 103 350
40% 38 103 379
30% 38 103 385
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.