Sequence Similarity Clusters for the Entities in PDB 4BBS

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 114 211
95 % 41 114 299
90 % 41 114 313
70 % 41 114 344
50 % 41 124 346
40 % 41 124 378
30 % 41 124 380
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 131 172
95 % 43 131 236
90 % 43 131 246
70 % 43 141 263
50 % 43 149 257
40 % 43 149 279
30 % 43 149 288
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 116 207
95 % 41 116 294
90 % 41 116 307
70 % 41 116 338
50 % 41 116 397
40 % 41 117 419
30 % 41 117 420
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 127 178
95 % 41 127 246
90 % 41 127 254
70 % 41 127 285
50 % 41 127 321
40 % 41 127 346
30 % 41 127 354
Entity #13 | Chains: M
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6438
95 % 2 9 6977
90 % 2 9 6949
70 % 2 9 6766
50 % 2 9 6274
40 % 2 9 5847
30 % 2 9 5240
Entity #14 | Chains: N
5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: P
5'-R(*AP*UP*AP*UP*CP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: T
5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 115 208
95 % 41 116 288
90 % 41 116 300
70 % 41 116 334
50 % 41 126 336
40 % 41 134 322
30 % 41 137 327
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 111 213
95 % 39 111 307
90 % 39 111 322
70 % 39 111 358
50 % 39 112 411
40 % 39 112 447
30 % 39 112 441
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 60 507
95 % 21 60 712
90 % 21 60 742
70 % 21 61 775
50 % 21 63 789
40 % 21 63 816
30 % 21 63 817
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 132 169
95 % 44 132 231
90 % 44 132 242
70 % 44 132 277
50 % 44 133 303
40 % 44 142 302
30 % 44 142 313
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 126 179
95 % 41 126 248
90 % 41 126 256
70 % 41 126 288
50 % 41 137 298
40 % 41 137 316
30 % 41 137 330
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 63 467
95 % 22 63 657
90 % 22 63 685
70 % 22 63 732
50 % 23 74 596
40 % 23 74 630
30 % 23 74 635
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 131 171
95 % 43 132 234
90 % 43 132 245
70 % 43 132 278
50 % 43 132 308
40 % 43 132 332
30 % 43 143 311
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 115 209
95 % 41 115 298
90 % 41 115 311
70 % 41 115 343
50 % 41 116 394
40 % 41 116 427
30 % 41 119 415

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.