Sequence Similarity Clusters for the Entities in PDB 4BBS

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 115 229
95 % 41 115 321
90 % 41 115 339
70 % 42 120 356
50 % 42 132 368
40 % 42 132 393
30 % 42 132 397
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 142 175
95 % 43 142 236
90 % 43 142 250
70 % 44 159 250
50 % 44 167 246
40 % 44 167 264
30 % 44 167 270
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 117 224
95 % 41 117 315
90 % 41 117 333
70 % 41 117 369
50 % 42 122 416
40 % 42 124 434
30 % 42 124 435
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 138 183
95 % 41 138 244
90 % 41 138 259
70 % 41 138 289
50 % 42 143 313
40 % 42 143 328
30 % 42 143 336
Entity #13 | Chains: M
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 6940
95 % 2 9 7505
90 % 2 9 7458
70 % 2 9 7264
50 % 2 9 6699
40 % 2 9 6227
30 % 2 9 5575
Entity #14 | Chains: N
5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: P
5'-R(*AP*UP*AP*UP*CP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: T
5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 116 226
95 % 41 117 313
90 % 41 117 329
70 % 42 124 339
50 % 42 134 357
40 % 42 142 324
30 % 42 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 112 232
95 % 39 112 326
90 % 39 112 345
70 % 39 112 378
50 % 39 114 439
40 % 39 114 470
30 % 39 114 471
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 61 563
95 % 21 61 781
90 % 21 61 809
70 % 21 62 833
50 % 22 69 753
40 % 22 69 785
30 % 22 69 780
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 143 172
95 % 44 143 233
90 % 44 143 248
70 % 45 148 271
50 % 45 150 291
40 % 45 160 284
30 % 45 160 293
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 137 185
95 % 41 137 247
90 % 41 137 262
70 % 41 137 294
50 % 42 155 279
40 % 42 155 298
30 % 42 155 307
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 64 522
95 % 22 64 715
90 % 22 64 745
70 % 22 64 796
50 % 24 82 567
40 % 24 82 605
30 % 24 82 595
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 142 174
95 % 43 143 234
90 % 43 143 249
70 % 43 143 280
50 % 44 148 296
40 % 44 148 311
30 % 44 161 292
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 116 228
95 % 41 116 320
90 % 41 116 338
70 % 42 121 355
50 % 42 123 406
40 % 42 123 436
30 % 42 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.