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An Information Portal to 108263 Biological Macromolecular Structures

Structure of an initially transcribing RNA polymerase II-TFIIB complex
Sequence Clustering and Redundancy Reduction Results
4BBS
Sequence Clusters for the Sequence Entities in PDB 4BBS
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 101 204
95% 38 101 289
90% 38 101 304
70% 38 101 321
50% 38 102 349
40% 38 102 374
30% 38 102 380
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 107 187
95% 40 107 263
90% 40 107 275
70% 40 108 287
50% 40 116 274
40% 40 116 304
30% 40 116 319
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 103 200
95% 38 103 283
90% 38 103 298
70% 38 103 317
50% 38 103 353
40% 38 104 368
30% 38 104 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 106 189
95% 40 106 265
90% 40 106 279
70% 40 106 298
50% 40 106 328
40% 40 106 355
30% 40 106 363
Entity #13: Chains: M - TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 11403
95% 2 5 10946
90% 2 5 10792
70% 2 5 10215
50% 2 5 9193
40% 2 5 8383
30% 2 5 7364
Entity #14: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: P - 5'-R(*AP*UP*AP*UP*CP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #16: Chains: T - 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3' dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 102 201
95% 38 103 280
90% 38 103 294
70% 38 103 314
50% 38 104 340
40% 38 112 316
30% 38 112 326
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 101 205
95% 38 101 291
90% 38 101 306
70% 38 101 323
50% 38 102 351
40% 38 102 377
30% 38 102 384
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 51 448
95% 19 51 651
90% 19 51 684
70% 19 52 726
50% 19 52 817
40% 19 52 835
30% 19 52 841
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 108 184
95% 41 108 257
90% 41 108 270
70% 41 108 289
50% 41 109 307
40% 41 109 334
30% 41 109 346
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 105 193
95% 40 105 274
90% 40 105 286
70% 40 105 305
50% 40 107 319
40% 40 107 349
30% 40 107 354
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 53 425
95% 20 53 619
90% 20 53 650
70% 20 53 700
50% 21 55 692
40% 21 55 716
30% 21 55 717
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 107 186
95% 40 108 258
90% 40 108 271
70% 40 108 290
50% 40 108 320
40% 40 108 350
30% 40 110 345
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 102 203
95% 38 102 288
90% 38 102 303
70% 38 102 320
50% 38 103 347
40% 38 103 372
30% 38 103 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.