Sequence Similarity Clusters for the Entities in PDB 4BBS

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 113 206
95 % 41 113 288
90 % 41 113 302
70 % 41 113 326
50 % 41 123 327
40 % 41 123 353
30 % 41 123 362
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 124 176
95 % 43 124 241
90 % 43 124 251
70 % 43 134 254
50 % 43 142 252
40 % 43 142 273
30 % 43 142 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 115 203
95 % 41 115 285
90 % 41 115 299
70 % 41 115 323
50 % 41 115 354
40 % 41 116 376
30 % 41 116 382
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 120 181
95 % 41 120 251
90 % 41 120 260
70 % 41 120 296
50 % 41 120 325
40 % 41 120 351
30 % 41 120 359
Entity #13 | Chains: M
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 8 7308
95 % 2 8 7697
90 % 2 8 7649
70 % 2 8 7368
50 % 2 8 6766
40 % 2 8 6289
30 % 2 8 5591
Entity #14 | Chains: N
5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: P
5'-R(*AP*UP*AP*UP*CP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #16 | Chains: T
5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 114 204
95 % 41 115 281
90 % 41 115 295
70 % 41 115 319
50 % 41 125 321
40 % 41 133 307
30 % 41 136 310
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 110 209
95 % 39 110 299
90 % 39 110 314
70 % 39 110 334
50 % 39 111 360
40 % 39 111 393
30 % 39 111 395
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 59 445
95 % 21 59 652
90 % 21 59 696
70 % 21 60 709
50 % 21 62 755
40 % 21 62 789
30 % 21 62 793
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 125 171
95 % 44 125 235
90 % 44 125 246
70 % 44 125 277
50 % 44 126 308
40 % 44 135 301
30 % 44 135 317
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 119 186
95 % 41 119 252
90 % 41 119 261
70 % 41 119 298
50 % 41 130 294
40 % 41 130 318
30 % 41 130 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 62 396
95 % 22 62 579
90 % 22 62 609
70 % 22 62 657
50 % 23 73 575
40 % 23 73 608
30 % 23 73 619
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 124 175
95 % 43 125 236
90 % 43 125 247
70 % 43 125 279
50 % 43 125 316
40 % 43 125 336
30 % 43 136 313
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 114 205
95 % 41 114 287
90 % 41 114 301
70 % 41 114 325
50 % 41 115 347
40 % 41 115 380
30 % 41 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.