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Structure of RNA polymerase II-TFIIB complex
Sequence Clustering and Redundancy Reduction Results
4BBR
Sequence Clusters for the Sequence Entities in PDB 4BBR
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 96 209
95% 28 96 294
90% 28 96 311
70% 28 96 328
50% 28 97 355
40% 28 97 377
30% 28 97 388
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 102 191
95% 30 102 269
90% 30 102 283
70% 30 103 295
50% 30 111 277
40% 30 111 306
30% 30 111 322
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 98 205
95% 28 98 289
90% 28 98 306
70% 28 98 322
50% 28 98 362
40% 28 99 373
30% 28 99 383
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 101 193
95% 30 101 274
90% 30 101 288
70% 30 101 305
50% 30 101 343
40% 30 101 367
30% 30 101 378
Entity #13: Chains: M - TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19878
95% 1 3 16934
90% 1 3 16508
70% 1 3 15302
50% 1 3 13433
40% 1 3 12078
30% 1 3 10433
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 97 206
95% 28 98 286
90% 28 98 302
70% 28 98 320
50% 28 99 348
40% 28 107 316
30% 28 107 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 96 211
95% 28 96 296
90% 28 96 313
70% 28 96 329
50% 28 97 358
40% 28 97 380
30% 28 97 390
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 49 466
95% 14 49 666
90% 14 49 701
70% 14 50 742
50% 14 50 826
40% 14 50 852
30% 14 50 850
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 103 186
95% 31 103 263
90% 31 103 276
70% 31 103 298
50% 31 104 324
40% 31 104 348
30% 31 104 356
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 100 195
95% 30 100 279
90% 30 100 293
70% 30 100 312
50% 30 102 334
40% 30 102 360
30% 30 102 370
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 51 424
95% 15 51 618
90% 15 51 652
70% 15 51 711
50% 16 53 691
40% 16 53 717
30% 16 53 717
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 102 189
95% 30 103 265
90% 30 103 278
70% 30 103 299
50% 30 103 335
40% 30 103 361
30% 30 105 351
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 97 207
95% 28 97 292
90% 28 97 309
70% 28 97 325
50% 28 98 354
40% 28 98 376
30% 28 98 387
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.