Sequence Similarity Clusters for the Entities in PDB 4BBR

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 114 209
95 % 29 114 296
90 % 29 114 308
70 % 29 114 336
50 % 29 124 332
40 % 29 124 359
30 % 29 124 366
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 128 174
95 % 31 128 239
90 % 31 128 249
70 % 31 138 263
50 % 31 146 259
40 % 31 146 279
30 % 31 146 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 116 204
95 % 29 116 291
90 % 29 116 303
70 % 29 116 330
50 % 29 116 369
40 % 29 117 393
30 % 29 117 393
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 124 180
95 % 30 124 249
90 % 30 124 256
70 % 30 124 292
50 % 30 124 323
40 % 30 124 345
30 % 30 124 352
Entity #13 | Chains: M
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 6370
95 % 1 9 6912
90 % 1 9 6889
70 % 1 9 6709
50 % 1 9 6223
40 % 1 9 5809
30 % 1 9 5207
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 115 205
95 % 29 116 286
90 % 29 116 297
70 % 29 116 326
50 % 29 126 328
40 % 29 134 317
30 % 29 137 321
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 111 211
95 % 28 111 305
90 % 28 111 318
70 % 28 111 344
50 % 28 112 388
40 % 28 112 427
30 % 28 112 419
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 60 493
95 % 15 60 697
90 % 15 60 728
70 % 15 61 753
50 % 15 63 771
40 % 15 63 801
30 % 15 63 802
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 129 170
95 % 32 129 233
90 % 32 129 242
70 % 32 129 275
50 % 32 130 304
40 % 32 139 306
30 % 32 139 315
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 123 182
95 % 30 123 254
90 % 30 123 262
70 % 30 123 297
50 % 30 134 297
40 % 30 134 320
30 % 30 134 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 63 445
95 % 16 63 635
90 % 16 63 671
70 % 16 63 711
50 % 17 74 584
40 % 17 74 621
30 % 17 74 630
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 128 173
95 % 31 129 236
90 % 31 129 245
70 % 31 129 277
50 % 31 129 312
40 % 31 129 333
30 % 31 140 311
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 115 207
95 % 29 115 295
90 % 29 115 307
70 % 29 115 335
50 % 29 116 365
40 % 29 116 401
30 % 29 119 386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.