POP-OUT | CLOSE

An Information Portal to 109274 Biological Macromolecular Structures

Structure of RNA polymerase II-TFIIB complex
Sequence Clustering and Redundancy Reduction Results
4BBR
Sequence Clusters for the Sequence Entities in PDB 4BBR
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 101 206
95% 28 101 290
90% 28 101 307
70% 28 101 326
50% 28 102 351
40% 28 102 378
30% 28 102 383
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 107 188
95% 30 107 267
90% 30 107 279
70% 30 108 289
50% 30 116 276
40% 30 116 306
30% 30 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 103 201
95% 28 103 286
90% 28 103 301
70% 28 103 319
50% 28 103 355
40% 28 104 373
30% 28 104 378
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 106 190
95% 30 106 269
90% 30 106 283
70% 30 106 302
50% 30 106 331
40% 30 106 361
30% 30 106 368
Entity #13: Chains: M - TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 5 11519
95% 1 5 11042
90% 1 5 10886
70% 1 5 10304
50% 1 5 9269
40% 1 5 8451
30% 1 5 7418
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 102 203
95% 28 103 283
90% 28 103 297
70% 28 103 317
50% 28 104 343
40% 28 112 321
30% 28 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 101 207
95% 28 101 291
90% 28 101 308
70% 28 101 327
50% 28 102 353
40% 28 102 381
30% 28 102 387
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 14 51 453
95% 14 51 657
90% 14 51 690
70% 14 52 735
50% 14 52 824
40% 14 52 846
30% 14 52 850
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 31 108 186
95% 31 108 259
90% 31 108 272
70% 31 108 291
50% 31 109 311
40% 31 109 339
30% 31 109 349
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 105 194
95% 30 105 278
90% 30 105 290
70% 30 105 309
50% 30 107 320
40% 30 107 352
30% 30 107 357
Entity #7: Chains: G - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 53 431
95% 15 53 626
90% 15 53 656
70% 15 53 707
50% 16 55 702
40% 16 55 732
30% 16 55 733
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 107 187
95% 30 108 260
90% 30 108 273
70% 30 108 292
50% 30 108 321
40% 30 108 353
30% 30 110 347
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 102 205
95% 28 102 289
90% 28 102 306
70% 28 102 324
50% 28 103 349
40% 28 103 376
30% 28 103 381
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.