Sequence Similarity Clusters for the Entities in PDB 4BBR

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 114 206
95 % 29 114 291
90 % 29 114 304
70 % 29 114 329
50 % 29 124 328
40 % 29 124 354
30 % 29 124 361
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 125 174
95 % 31 125 238
90 % 31 125 248
70 % 31 135 258
50 % 31 143 253
40 % 31 143 272
30 % 31 143 288
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 116 202
95 % 29 116 287
90 % 29 116 299
70 % 29 116 324
50 % 29 116 353
40 % 29 117 378
30 % 29 117 383
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 121 181
95 % 30 121 251
90 % 30 121 259
70 % 30 121 297
50 % 30 121 324
40 % 30 121 348
30 % 30 121 354
Entity #13 | Chains: M
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 6209
95 % 1 9 6774
90 % 1 9 6747
70 % 1 9 6577
50 % 1 9 6110
40 % 1 9 5706
30 % 1 9 5117
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 115 203
95 % 29 116 284
90 % 29 116 295
70 % 29 116 321
50 % 29 126 322
40 % 29 134 310
30 % 29 137 311
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 111 209
95 % 28 111 299
90 % 28 111 314
70 % 28 111 335
50 % 28 112 360
40 % 28 112 396
30 % 28 112 396
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 60 443
95 % 15 60 650
90 % 15 60 689
70 % 15 61 712
50 % 15 63 749
40 % 15 63 786
30 % 15 63 788
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 126 169
95 % 32 126 234
90 % 32 126 244
70 % 32 126 274
50 % 32 127 307
40 % 32 136 303
30 % 32 136 319
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 120 184
95 % 30 120 254
90 % 30 120 262
70 % 30 120 299
50 % 30 131 293
40 % 30 131 316
30 % 30 131 332
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 63 395
95 % 16 63 585
90 % 16 63 616
70 % 16 63 659
50 % 17 74 570
40 % 17 74 606
30 % 17 74 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 125 173
95 % 31 126 235
90 % 31 126 245
70 % 31 126 277
50 % 31 126 314
40 % 31 126 336
30 % 31 137 314
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 115 205
95 % 29 115 290
90 % 29 115 303
70 % 29 115 328
50 % 29 116 350
40 % 29 116 382
30 % 29 119 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.