Sequence Similarity Clusters for the Entities in PDB 4BBR

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 115 229
95 % 29 115 321
90 % 29 115 339
70 % 30 120 356
50 % 30 132 368
40 % 30 132 393
30 % 30 132 397
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 142 175
95 % 31 142 236
90 % 31 142 250
70 % 32 159 250
50 % 32 167 246
40 % 32 167 264
30 % 32 167 270
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 117 224
95 % 29 117 315
90 % 29 117 333
70 % 29 117 369
50 % 30 122 416
40 % 30 124 434
30 % 30 124 435
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 138 183
95 % 30 138 244
90 % 30 138 259
70 % 30 138 289
50 % 31 143 313
40 % 31 143 328
30 % 31 143 336
Entity #13 | Chains: M
TRANSCRIPTION INITIATION FACTOR IIB protein, length: 345 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 6940
95 % 1 9 7505
90 % 1 9 7458
70 % 1 9 7264
50 % 1 9 6699
40 % 1 9 6227
30 % 1 9 5575
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 116 226
95 % 29 117 313
90 % 29 117 329
70 % 30 124 339
50 % 30 134 357
40 % 30 142 324
30 % 30 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 112 232
95 % 28 112 326
90 % 28 112 345
70 % 28 112 378
50 % 28 114 439
40 % 28 114 470
30 % 28 114 471
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 61 563
95 % 15 61 781
90 % 15 61 809
70 % 15 62 833
50 % 16 69 753
40 % 16 69 785
30 % 16 69 780
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 143 172
95 % 32 143 233
90 % 32 143 248
70 % 33 148 271
50 % 33 150 291
40 % 33 160 284
30 % 33 160 293
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 137 185
95 % 30 137 247
90 % 30 137 262
70 % 30 137 294
50 % 31 155 279
40 % 31 155 298
30 % 31 155 307
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 64 522
95 % 16 64 715
90 % 16 64 745
70 % 16 64 796
50 % 18 82 567
40 % 18 82 605
30 % 18 82 595
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 142 174
95 % 31 143 234
90 % 31 143 249
70 % 31 143 280
50 % 32 148 296
40 % 32 148 311
30 % 32 161 292
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 116 228
95 % 29 116 320
90 % 29 116 338
70 % 30 121 355
50 % 30 123 406
40 % 30 123 436
30 % 30 126 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.